Detailed information
Bioinformatically predicted
Overview
| Name | rapC | Type | Regulator |
| Locus tag | WV34_RS02255 | Genome accession | NZ_CP011252 |
| Coordinates | 443895..445025 (+) | Length | 376 a.a. |
| NCBI ID | WP_088612176.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain MT45 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Genomic Context
Location: 438895..450025
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WV34_RS02225 (WV34_02190) | - | 439940..440377 (-) | 438 | WP_013351058.1 | GNAT family N-acetyltransferase | - |
| WV34_RS20235 (WV34_02195) | - | 440663..441097 (+) | 435 | Protein_405 | peptidoglycan-binding protein | - |
| WV34_RS02240 (WV34_02200) | - | 441517..442284 (+) | 768 | WP_014471449.1 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| WV34_RS02245 (WV34_02205) | - | 442344..443477 (+) | 1134 | WP_088612175.1 | hypothetical protein | - |
| WV34_RS02250 (WV34_02210) | - | 443553..443756 (+) | 204 | WP_232469715.1 | DUF2651 family protein | - |
| WV34_RS02255 (WV34_02215) | rapC | 443895..445025 (+) | 1131 | WP_088612176.1 | tetratricopeptide repeat protein | Regulator |
| WV34_RS20420 | - | 445025..445159 (+) | 135 | WP_014469765.1 | hypothetical protein | - |
| WV34_RS20240 | - | 445209..445398 (-) | 190 | Protein_411 | hypothetical protein | - |
| WV34_RS02260 (WV34_02220) | - | 445669..445881 (-) | 213 | WP_013351065.1 | spore germination protein | - |
| WV34_RS02265 (WV34_02225) | - | 446168..446434 (-) | 267 | WP_088613817.1 | hypothetical protein | - |
| WV34_RS02270 (WV34_02230) | - | 446541..447818 (-) | 1278 | WP_088612177.1 | Nramp family divalent metal transporter | - |
| WV34_RS02275 (WV34_02235) | - | 448463..448816 (+) | 354 | WP_038462600.1 | antifungal polypeptide | - |
| WV34_RS02280 (WV34_02240) | - | 448875..449090 (-) | 216 | Protein_416 | DUF2188 domain-containing protein | - |
| WV34_RS02285 (WV34_02245) | - | 449148..449555 (-) | 408 | WP_088612178.1 | DUF5360 family protein | - |
| WV34_RS02290 (WV34_02250) | - | 449552..449917 (-) | 366 | WP_065521874.1 | multidrug efflux SMR transporter | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 44691.23 Da Isoelectric Point: 5.5453
>NTDB_id=126747 WV34_RS02255 WP_088612176.1 443895..445025(+) (rapC) [Bacillus amyloliquefaciens strain MT45]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAIGYYRKAERELNAVSDEMEQSEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLMEAESYYREALSIVRGLEEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCGKVKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETAVK
QSLGYLEEKHLWSDFAELTEKLGDFHFEKRNYVEGRNFLKKTIHAQTQILKVTEAI
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAIGYYRKAERELNAVSDEMEQSEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLMEAESYYREALSIVRGLEEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCGKVKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETAVK
QSLGYLEEKHLWSDFAELTEKLGDFHFEKRNYVEGRNFLKKTIHAQTQILKVTEAI
Nucleotide
Download Length: 1131 bp
>NTDB_id=126747 WV34_RS02255 WP_088612176.1 443895..445025(+) (rapC) [Bacillus amyloliquefaciens strain MT45]
ATGGACCAAGTTTTGCCGTCGTCCCAGGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGTCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTTTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATAGAGATCGCCCCACAGTCGAC
GAACTGCTTGAGAAAATAGAAAAACCGCAAAAAAGACTTACAGGCCTCTTGAAATATTACTCATTATTTTTTCGTGGTAT
GTATGAGTTTGATCATAAAGAGTATGTTGAAGCGATAGGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAATCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAATTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTTGG
TGCTAACATGTACGATATGTACAGGCTGATGGAGGCCGAATCATATTATCGGGAAGCATTAAGTATCGTCCGCGGCTTGG
AAGAGGAAAAAGTGAAAAGAATTATAGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGAAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGGGTGAGATCATTATATAT
GATGGCAAATGTCCTGTACCAATGTGGTAAAGTCAAGGAAGCGCGTTTCTTTTATGAAACGGCTTTAAATCGTGCCCGGA
CTTCTAATGAAGAAGAATATTTGGCTAAATTAAAAATCATTAATTCATTATACGAGGAATATAATGAAACAGCAGTGAAA
CAAAGCTTAGGTTACTTAGAAGAGAAACACCTTTGGTCTGATTTCGCAGAGCTAACTGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGGAACTATGTAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA
ATGGACCAAGTTTTGCCGTCGTCCCAGGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGTCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTTTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATAGAGATCGCCCCACAGTCGAC
GAACTGCTTGAGAAAATAGAAAAACCGCAAAAAAGACTTACAGGCCTCTTGAAATATTACTCATTATTTTTTCGTGGTAT
GTATGAGTTTGATCATAAAGAGTATGTTGAAGCGATAGGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAATCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAATTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTTGG
TGCTAACATGTACGATATGTACAGGCTGATGGAGGCCGAATCATATTATCGGGAAGCATTAAGTATCGTCCGCGGCTTGG
AAGAGGAAAAAGTGAAAAGAATTATAGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGAAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGGGTGAGATCATTATATAT
GATGGCAAATGTCCTGTACCAATGTGGTAAAGTCAAGGAAGCGCGTTTCTTTTATGAAACGGCTTTAAATCGTGCCCGGA
CTTCTAATGAAGAAGAATATTTGGCTAAATTAAAAATCATTAATTCATTATACGAGGAATATAATGAAACAGCAGTGAAA
CAAAGCTTAGGTTACTTAGAAGAGAAACACCTTTGGTCTGATTTCGCAGAGCTAACTGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGGAACTATGTAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
37.027 |
98.404 |
0.364 |