Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   WV34_RS02180 Genome accession   NZ_CP011252
Coordinates   425761..426195 (+) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain MT45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 420761..431195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS02150 (WV34_02115) - 421428..422291 (+) 864 WP_065980733.1 SDR family oxidoreductase -
  WV34_RS02155 (WV34_02120) - 422304..422807 (+) 504 WP_065521888.1 D-lyxose/D-mannose family sugar isomerase -
  WV34_RS02160 (WV34_02125) - 422894..423517 (+) 624 WP_088612167.1 GNAT family protein -
  WV34_RS02165 (WV34_02130) - 423524..423946 (+) 423 WP_013351046.1 pyridoxamine 5'-phosphate oxidase family protein -
  WV34_RS02170 (WV34_02135) - 424445..425254 (+) 810 WP_013351047.1 lipid II flippase Amj family protein -
  WV34_RS02175 (WV34_02140) - 425297..425587 (-) 291 WP_088612168.1 DUF3817 domain-containing protein -
  WV34_RS02180 (WV34_02145) lrpC 425761..426195 (+) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  WV34_RS02185 (WV34_02150) - 426260..428446 (+) 2187 WP_088612169.1 DNA topoisomerase III -
  WV34_RS02190 (WV34_02155) - 428680..429765 (+) 1086 WP_088612170.1 lipoprotein YdaJ -
  WV34_RS02195 (WV34_02160) - 429746..430594 (+) 849 WP_088612171.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=126746 WV34_RS02180 WP_003156263.1 425761..426195(+) (lrpC) [Bacillus amyloliquefaciens strain MT45]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=126746 WV34_RS02180 WP_003156263.1 425761..426195(+) (lrpC) [Bacillus amyloliquefaciens strain MT45]
ATGAAACTAGATAATGTTGATCTGAGTATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTTGGAAG
AAAAATCAAATTGTCAGCCCCATCCGTCACAGAGCGTGTCAGGCAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTTTCCTGCATTGTTGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGCGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGCCTGGAAACGATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTAACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799

Multiple sequence alignment