Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   WV34_RS01115 Genome accession   NZ_CP011252
Coordinates   198934..199617 (+) Length   227 a.a.
NCBI ID   WP_201261276.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 193934..204617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS01095 (WV34_01080) - 196146..197018 (+) 873 WP_088612059.1 ABC transporter ATP-binding protein -
  WV34_RS01100 (WV34_01085) - 196996..197658 (+) 663 WP_088612060.1 ABC-2 transporter permease -
  WV34_RS01105 (WV34_01090) - 197738..198109 (-) 372 Protein_185 hypothetical protein -
  WV34_RS01110 (WV34_01095) - 198194..198829 (+) 636 WP_161493063.1 thioesterase domain-containing protein -
  WV34_RS01115 (WV34_01100) braR 198934..199617 (+) 684 WP_201261276.1 response regulator transcription factor Regulator
  WV34_RS01120 (WV34_01105) - 199614..200636 (+) 1023 WP_088612062.1 sensor histidine kinase -
  WV34_RS01130 (WV34_01115) - 201537..202301 (+) 765 WP_088612064.1 ABC transporter ATP-binding protein -
  WV34_RS01135 (WV34_01120) - 202288..204213 (+) 1926 WP_088612065.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26478.49 Da        Isoelectric Point: 4.8457

>NTDB_id=126733 WV34_RS01115 WP_201261276.1 198934..199617(+) (braR) [Bacillus amyloliquefaciens strain MT45]
MDNIYKLLIIEDDKDMAKALQNLLVKWNFDTVICGDFDNILSIYEKEEPHIILLDINIPSFDGFYWCKKIREISSVPIIF
CSSRNSNMDIVMAINNGGDDYIQKPFDSHVLVAKLQAIIRRTYEYITAESHLIESNNVILNLNDAKIYFQDQSLELTKNE
FKILKTLMENKGKVVSRDNLMRQLWNDDIYVNENTLTVNINRLRNRLEGINVDDFILTKKGMGYIIQ

Nucleotide


Download         Length: 684 bp        

>NTDB_id=126733 WV34_RS01115 WP_201261276.1 198934..199617(+) (braR) [Bacillus amyloliquefaciens strain MT45]
TTGGATAATATATATAAATTACTGATTATAGAAGACGATAAGGATATGGCTAAGGCGTTACAAAATTTACTTGTTAAATG
GAATTTTGATACTGTTATATGCGGAGATTTTGATAATATTTTGTCAATATATGAAAAAGAAGAGCCTCACATCATATTAT
TGGACATTAATATTCCTTCATTTGATGGTTTTTATTGGTGTAAGAAAATAAGAGAAATTTCAAGTGTCCCAATTATTTTT
TGCTCTTCTAGAAACAGTAATATGGATATTGTCATGGCTATTAACAATGGCGGGGATGATTATATTCAAAAACCATTTGA
CAGCCATGTATTGGTGGCGAAATTACAAGCAATTATAAGAAGAACTTATGAGTACATAACAGCAGAATCTCATCTAATCG
AATCTAATAATGTGATATTAAACCTTAACGATGCAAAAATATATTTCCAAGATCAGAGTTTAGAGCTTACAAAGAATGAA
TTTAAAATTCTAAAAACGTTAATGGAAAACAAGGGAAAAGTTGTTTCACGGGATAATTTAATGAGACAGCTTTGGAATGA
TGATATTTACGTAAACGAAAATACGTTGACAGTAAATATAAATAGATTAAGGAATAGATTAGAGGGGATTAATGTTGATG
ACTTCATTTTAACAAAAAAAGGAATGGGATATATAATTCAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-115)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.119

96.476

0.445