Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   Ach5_RS11840 Genome accession   NZ_CP011246
Coordinates   2396496..2397461 (+) Length   321 a.a.
NCBI ID   WP_038492099.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Ach5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2391496..2402461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ach5_RS11815 (Ach5_23370) - 2391787..2392731 (+) 945 WP_003514032.1 tripartite tricarboxylate transporter substrate binding protein -
  Ach5_RS11820 (Ach5_23380) - 2392728..2393222 (+) 495 WP_013636754.1 tripartite tricarboxylate transporter TctB family protein -
  Ach5_RS11825 (Ach5_23390) - 2393330..2394847 (+) 1518 WP_003514036.1 tripartite tricarboxylate transporter permease -
  Ach5_RS11830 (Ach5_23400) - 2394977..2395237 (+) 261 WP_003514037.1 hypothetical protein -
  Ach5_RS11835 (Ach5_23410) - 2395438..2396376 (+) 939 WP_013636756.1 siderophore ABC transporter substrate-binding protein -
  Ach5_RS11840 (Ach5_23420) ceuB 2396496..2397461 (+) 966 WP_038492099.1 ABC transporter permease Machinery gene
  Ach5_RS11845 (Ach5_23430) - 2397454..2398422 (+) 969 WP_003514044.1 iron chelate uptake ABC transporter family permease subunit -
  Ach5_RS11850 (Ach5_23440) - 2398419..2399177 (+) 759 WP_019565077.1 ABC transporter ATP-binding protein -
  Ach5_RS11855 (Ach5_23450) dps 2399303..2399791 (+) 489 WP_003514046.1 DNA starvation/stationary phase protection protein Dps -
  Ach5_RS27290 (Ach5_23460) - 2399869..2400090 (-) 222 WP_013636760.1 hypothetical protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 34172.17 Da        Isoelectric Point: 11.0429

>NTDB_id=126716 Ach5_RS11840 WP_038492099.1 2396496..2397461(+) (ceuB) [Agrobacterium tumefaciens strain Ach5]
MKSLSLILALLLALTLAIVSLFVGVSNVSLATLFAPDTSADALRVLLVSRIPRTLALILAGSSMAIAGLIMQMLVRNRFV
EPSTAGTTESAGLGLLTVTLLAPETPIFGKMLVAAAFALAGTALFLRILRQVPLRDVLLVPLIGIMLGGVISAVTTFFAY
RFDLLQSLGAWMTGDFSGVLRGRYELLWIGFVFAIAAYLAADRFTVAGMGRDFTTNLGLNYRRVMALGLTIVSLVSAVVV
VTVGMIPFLGLIVPNVVSLIIGDNMRRSVPWVATLGAVFVLACDIIGRTVRAPYEIPIGTVVGVIGSALFLYLLLRKRHH
A

Nucleotide


Download         Length: 966 bp        

>NTDB_id=126716 Ach5_RS11840 WP_038492099.1 2396496..2397461(+) (ceuB) [Agrobacterium tumefaciens strain Ach5]
GTGAAATCCCTGTCCCTCATCCTCGCCCTCCTTCTGGCGCTGACACTCGCCATCGTCAGCCTGTTCGTCGGCGTGAGCAA
CGTCTCGCTAGCGACGCTTTTTGCGCCGGATACGAGCGCGGATGCACTGCGCGTGCTCCTCGTCAGCCGCATTCCGCGCA
CGCTGGCGCTCATACTGGCGGGAAGCTCGATGGCGATTGCCGGTCTCATCATGCAGATGCTGGTGCGCAACCGCTTCGTG
GAGCCTTCGACGGCTGGCACCACCGAATCCGCCGGCCTTGGCCTGCTCACCGTCACCCTGCTTGCCCCGGAAACGCCGAT
CTTCGGCAAGATGCTGGTGGCGGCCGCTTTCGCGCTGGCCGGAACCGCACTTTTCCTGCGTATTCTACGGCAGGTGCCGC
TGCGCGATGTGCTGCTGGTGCCGCTGATCGGCATCATGCTGGGCGGCGTCATTTCTGCCGTCACCACTTTCTTCGCCTAT
CGTTTCGATCTGCTGCAATCGCTCGGCGCGTGGATGACCGGGGATTTTTCCGGCGTGCTGCGTGGCCGCTATGAATTGTT
GTGGATCGGCTTCGTTTTCGCCATCGCTGCCTATCTCGCCGCCGACCGTTTCACGGTGGCAGGCATGGGGCGCGACTTCA
CCACCAATCTCGGCCTGAACTATCGCCGGGTGATGGCGCTCGGCCTCACCATCGTCTCGCTGGTCAGTGCCGTCGTCGTC
GTCACGGTGGGCATGATCCCTTTTCTCGGCCTGATTGTGCCGAATGTGGTCAGCCTGATTATCGGCGACAACATGCGCCG
TTCCGTGCCCTGGGTGGCGACGCTTGGCGCGGTCTTCGTTCTTGCCTGCGACATCATCGGCAGAACGGTGCGCGCGCCCT
ATGAGATACCGATCGGAACCGTGGTCGGCGTCATCGGCAGCGCGTTGTTCCTCTATCTCCTGCTCCGGAAACGCCACCAT
GCATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

43.574

99.377

0.433