Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   Ach5_RS02295 Genome accession   NZ_CP011246
Coordinates   469611..469976 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens strain Ach5     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 464611..474976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ach5_RS02280 (Ach5_04390) - 466826..467203 (-) 378 WP_038489792.1 hypothetical protein -
  Ach5_RS02285 (Ach5_04400) - 467720..469315 (+) 1596 WP_233284931.1 globin-coupled sensor protein -
  Ach5_RS02290 (Ach5_04410) - 469315..469614 (+) 300 WP_013635450.1 STAS domain-containing protein -
  Ach5_RS02295 (Ach5_04420) scnR 469611..469976 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  Ach5_RS02300 (Ach5_04430) - 469993..472260 (+) 2268 WP_025592437.1 chemotaxis protein CheA -
  Ach5_RS02305 (Ach5_04440) cheR 472274..473182 (+) 909 WP_038489797.1 protein-glutamate O-methyltransferase CheR -
  Ach5_RS02310 (Ach5_04450) cheB 473179..474234 (+) 1056 WP_013635453.1 protein-glutamate O-methylesterase CheB -
  Ach5_RS02315 (Ach5_04460) cheY2 474234..474623 (+) 390 WP_003515008.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=126696 Ach5_RS02295 WP_003493773.1 469611..469976(+) (scnR) [Agrobacterium tumefaciens strain Ach5]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=126696 Ach5_RS02295 WP_003493773.1 469611..469976(+) (scnR) [Agrobacterium tumefaciens strain Ach5]
GTGAAGAAAAAAGTTCTTACCGTGGATGATTCCAGAACGATCAGGAACATGCTCCTGGTCACGCTCAACAATGCCGGTTT
CGAGACAATTCAGGCCGAAGACGGCATTGAGGGTCTTGAAGTGCTGGAGCAGAGCAACCCCGACGTCATCGTGACCGATA
TCAACATGCCCCGTCTTGATGGTTTCGGCTTCATCGAGGGTGTGCGTCGCAACGAGAAGTACCGGGCCATACCGATCCTC
GTTCTGACGACCGAAAGCGACGCAGAGAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACCGGCTGGATCGTCAAGCCGTT
CGATCCTGCGAAGCTCATCGATGCCATTGAACGCGTAACTGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364