Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   SMQ301_RS05440 Genome accession   NZ_CP011217
Coordinates   1024883..1025365 (-) Length   160 a.a.
NCBI ID   WP_011681193.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SMQ-301     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1019883..1030365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMQ301_RS05420 (SMQ301_1108) pepT 1020364..1021587 (-) 1224 WP_046206468.1 peptidase T -
  SMQ301_RS05425 (SMQ301_1110) lepB 1021795..1022352 (-) 558 WP_011681191.1 signal peptidase I -
  SMQ301_RS05430 (SMQ301_1111) - 1022475..1023704 (-) 1230 WP_002953086.1 tetratricopeptide repeat protein -
  SMQ301_RS05435 (SMQ301_1112) - 1023694..1024872 (-) 1179 WP_024704144.1 AI-2E family transporter -
  SMQ301_RS05440 (SMQ301_1113) mutX 1024883..1025365 (-) 483 WP_011681193.1 NUDIX hydrolase Machinery gene
  SMQ301_RS05445 (SMQ301_1114) ftsX 1025521..1026450 (-) 930 WP_011681194.1 permease-like cell division protein FtsX -
  SMQ301_RS05450 (SMQ301_1115) ftsE 1026443..1027135 (-) 693 WP_002953094.1 cell division ATP-binding protein FtsE -
  SMQ301_RS05460 (SMQ301_1117) queG 1028374..1029492 (-) 1119 WP_002953100.1 tRNA epoxyqueuosine(34) reductase QueG -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18885.35 Da        Isoelectric Point: 4.7200

>NTDB_id=126628 SMQ301_RS05440 WP_011681193.1 1024883..1025365(-) (mutX) [Streptococcus thermophilus strain SMQ-301]
MTKLATICYIDNGKELLLLHRNKKPNDVHEGKWISVGGKLESGETPDECARREIFEETHLTVKKMDFKGMITFPEFTPGH
DWYTYVFKVTDFEGKLISDEESREGTLEWVPYDQVLTKQTWEGDYEIFKWILEDKPFFSAKFSYDCNQNLIDKTVTFYDK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=126628 SMQ301_RS05440 WP_011681193.1 1024883..1025365(-) (mutX) [Streptococcus thermophilus strain SMQ-301]
ATGACAAAGTTAGCTACCATTTGTTATATTGACAATGGGAAGGAGCTTTTGCTCCTACATCGTAATAAAAAGCCTAATGA
TGTTCATGAAGGAAAGTGGATTTCTGTCGGGGGAAAACTAGAATCGGGAGAAACGCCTGACGAATGTGCTCGTCGTGAAA
TTTTCGAGGAAACTCATTTGACAGTGAAAAAGATGGACTTCAAAGGTATGATTACCTTCCCAGAATTTACTCCGGGCCAC
GATTGGTATACCTATGTCTTTAAGGTGACTGATTTTGAAGGAAAACTCATTTCTGATGAGGAATCTCGTGAAGGGACACT
TGAATGGGTACCATATGATCAGGTTTTAACTAAACAAACCTGGGAAGGTGACTATGAGATTTTTAAGTGGATTCTAGAAG
ATAAACCTTTCTTCTCTGCAAAATTTAGCTACGATTGTAACCAAAACTTGATAGATAAAACTGTAACATTTTATGATAAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.069

99.375

0.706

Multiple sequence alignment