Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SMQ301_RS02320 Genome accession   NZ_CP011217
Coordinates   415733..416176 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   Q5M5N4
Organism   Streptococcus thermophilus strain SMQ-301     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 410733..421176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMQ301_RS02300 (SMQ301_0425) - 411256..412008 (-) 753 WP_011680801.1 NUDIX domain-containing protein -
  SMQ301_RS09930 (SMQ301_0426) - 412072..413179 (-) 1108 Protein_383 AAA family ATPase -
  SMQ301_RS02310 (SMQ301_0427) gdhA 413523..414875 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  SMQ301_RS02315 (SMQ301_0428) - 415133..415543 (+) 411 WP_011680804.1 peptide deformylase -
  SMQ301_RS02320 (SMQ301_0429) rcrR 415733..416176 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SMQ301_RS02325 (SMQ301_0430) rcrP 416180..417994 (+) 1815 WP_011680805.1 ABC transporter ATP-binding protein Regulator
  SMQ301_RS02330 (SMQ301_0431) rcrQ 417984..419762 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  SMQ301_RS02335 (SMQ301_0432) - 419918..420289 (+) 372 WP_224103209.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=126608 SMQ301_RS02320 WP_002945408.1 415733..416176(+) (rcrR) [Streptococcus thermophilus strain SMQ-301]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=126608 SMQ301_RS02320 WP_002945408.1 415733..416176(+) (rcrR) [Streptococcus thermophilus strain SMQ-301]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M5N4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537