Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxS   Type   Regulator
Locus tag   FCFHV36_RS11365 Genome accession   NZ_CP011147
Coordinates   2238276..2238746 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain FCFHV36     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 2233276..2243746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCFHV36_RS11345 (FCFHV36_2064) coaW 2233584..2234387 (+) 804 WP_000862725.1 type II pantothenate kinase -
  FCFHV36_RS11350 (FCFHV36_2065) - 2234518..2235189 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  FCFHV36_RS11355 (FCFHV36_2066) ldmS 2235588..2236781 (-) 1194 WP_000183717.1 L-aspartate--L-methionine ligase LdmS -
  FCFHV36_RS11360 (FCFHV36_2067) - 2236781..2237965 (-) 1185 WP_001291497.1 M20 family metallopeptidase -
  FCFHV36_RS11365 (FCFHV36_2068) luxS 2238276..2238746 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  FCFHV36_RS11370 (FCFHV36_2069) - 2238898..2239248 (-) 351 WP_001024035.1 membrane protein -
  FCFHV36_RS11375 (FCFHV36_2070) - 2239262..2240563 (-) 1302 WP_001242311.1 pyrimidine-nucleoside phosphorylase -
  FCFHV36_RS11385 (FCFHV36_2071) deoC 2240842..2241504 (-) 663 WP_001083318.1 deoxyribose-phosphate aldolase -
  FCFHV36_RS11390 (FCFHV36_2072) deoD 2241818..2242528 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  FCFHV36_RS11395 (FCFHV36_2073) - 2242649..2243092 (-) 444 WP_000070866.1 Dps family protein -
  FCFHV36_RS11400 (FCFHV36_2074) - 2243292..2243705 (-) 414 WP_001123303.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence


Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=126576 FCFHV36_RS11365 WP_000164421.1 2238276..2238746(+) (luxS) [Staphylococcus aureus strain FCFHV36]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=126576 FCFHV36_RS11365 WP_000164421.1 2238276..2238746(+) (luxS) [Staphylococcus aureus strain FCFHV36]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCAG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTTGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains


Predicted by InterProScan.

(5-148)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P65329

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404


Multiple sequence alignment