Detailed information NTG0126486

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ECVR50_RS22320
• Genome accession: NZ_CP011134
• Coordinates: 4466206..4467231 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli VR50
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4461206..4472231

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECVR50_RS22290 (ECVR50_4379)	zapB	4461290..4461535 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
ECVR50_RS22295 (ECVR50_4380)	rraA	4461620..4462105 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ECVR50_RS22300 (ECVR50_4381)	menA	4462198..4463124 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ECVR50_RS22305 (ECVR50_4382)	hslU	4463191..4464522 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
ECVR50_RS22310 (ECVR50_4383)	hslV	4464532..4465062 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ECVR50_RS22315 (ECVR50_4384)	ftsN	4465155..4466114 (-)	960	WP_000068828.1	cell division protein FtsN	-
ECVR50_RS22320 (ECVR50_4385)	cytR	4466206..4467231 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
ECVR50_RS22325 (ECVR50_4386)	priA	4467387..4469585 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
ECVR50_RS22330 (ECVR50_4387)	rpmE	4469788..4470000 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
ECVR50_RS22335 (ECVR50_4388)	yiiX	4470061..4470669 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
ECVR50_RS22340 (ECVR50_4389)	metJ	4470853..4471170 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=126486 ECVR50_RS22320 WP_000644904.1 4466206..4467231(-) (cytR) [Escherichia coli VR50]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=126486 ECVR50_RS22320 WP_000644904.1 4466206..4467231(-) (cytR) [Escherichia coli VR50]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628