Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NCDO2118_RS00800 Genome accession   NZ_CP009054
Coordinates   156204..156992 (+) Length   262 a.a.
NCBI ID   WP_003129722.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis NCDO 2118     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 151204..161992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCDO2118_RS00775 (NCDO2118_0146) - 151572..152363 (+) 792 WP_010905159.1 DNA/RNA non-specific endonuclease -
  NCDO2118_RS00780 (NCDO2118_0147) - 152528..152737 (+) 210 WP_010905160.1 hypothetical protein -
  NCDO2118_RS00785 (NCDO2118_0148) - 152749..152988 (+) 240 WP_012897004.1 hypothetical protein -
  NCDO2118_RS00790 (NCDO2118_0149) - 153185..154768 (+) 1584 WP_012897005.1 hypothetical protein -
  NCDO2118_RS00795 (NCDO2118_0150) - 154837..156051 (+) 1215 WP_012897006.1 pyridoxal phosphate-dependent aminotransferase -
  NCDO2118_RS00800 (NCDO2118_0151) codY 156204..156992 (+) 789 WP_003129722.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NCDO2118_RS00805 (NCDO2118_0152) gatC 157617..157922 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  NCDO2118_RS00810 (NCDO2118_0153) gatA 157922..159382 (+) 1461 WP_038603073.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  NCDO2118_RS00815 (NCDO2118_0154) - 159386..159988 (+) 603 WP_012897008.1 NUDIX hydrolase -
  NCDO2118_RS00820 (NCDO2118_0155) gatB 160028..161461 (+) 1434 WP_003129725.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29128.46 Da        Isoelectric Point: 4.5254

>NTDB_id=126413 NCDO2118_RS00800 WP_003129722.1 156204..156992(+) (codY) [Lactococcus lactis subsp. lactis NCDO 2118]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=126413 NCDO2118_RS00800 WP_003129722.1 156204..156992(+) (codY) [Lactococcus lactis subsp. lactis NCDO 2118]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCGATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCATTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462

Multiple sequence alignment