Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IT63_RS11955 Genome accession   NZ_CP009049
Coordinates   2448752..2449357 (-) Length   201 a.a.
NCBI ID   WP_001265371.1    Uniprot ID   A0A5V4GKH9
Organism   Salmonella enterica subsp. enterica serovar Paratyphi A strain 50973     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2443752..2454357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IT63_RS11940 (IT63_11770) helD 2443969..2446023 (-) 2055 WP_000420524.1 DNA helicase IV -
  IT63_RS11945 (IT63_11775) - 2446147..2446593 (+) 447 WP_001261222.1 YccF domain-containing protein -
  IT63_RS11950 (IT63_11780) yccS 2446612..2448765 (+) 2154 WP_000950864.1 YccS family putative transporter -
  IT63_RS11955 (IT63_11785) sxy/tfoX 2448752..2449357 (-) 606 WP_001265371.1 TfoX/Sxy family DNA transformation protein Regulator
  IT63_RS11960 (IT63_11790) sulA 2449574..2450083 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  IT63_RS11965 (IT63_11795) ompA 2450440..2451492 (+) 1053 WP_001670727.1 porin OmpA -
  IT63_RS11970 (IT63_11800) matP 2451564..2452016 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  IT63_RS11975 (IT63_11805) - 2452202..2453962 (+) 1761 WP_000156454.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23202.99 Da        Isoelectric Point: 8.7403

>NTDB_id=126377 IT63_RS11955 WP_001265371.1 2448752..2449357(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Paratyphi A strain 50973]
MRVLSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=126377 IT63_RS11955 WP_001265371.1 2448752..2449357(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Paratyphi A strain 50973]
ATGAGAGTACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTCATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCGCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCTAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5V4GKH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment