Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DP17_RS07885 Genome accession   NZ_CP009046
Coordinates   1688971..1690344 (+) Length   457 a.a.
NCBI ID   WP_038399092.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain SEI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1683971..1695344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP17_RS07865 (DP17_1596) - 1683971..1684432 (+) 462 WP_038399087.1 CtsR family transcriptional regulator -
  DP17_RS07870 (DP17_1597) - 1684453..1685016 (+) 564 WP_038399089.1 UvrB/UvrC motif-containing protein -
  DP17_RS07875 (DP17_1598) - 1685006..1686013 (+) 1008 WP_080290094.1 protein arginine kinase -
  DP17_RS07880 (DP17_1599) - 1686027..1688480 (+) 2454 WP_001832300.1 ATP-dependent Clp protease ATP-binding subunit -
  DP17_RS07885 (DP17_1600) radA 1688971..1690344 (+) 1374 WP_038399092.1 DNA repair protein RadA Machinery gene
  DP17_RS07890 (DP17_1601) - 1690398..1691456 (+) 1059 WP_038399093.1 PIN/TRAM domain-containing protein -
  DP17_RS07895 (DP17_1602) gltX 1691866..1693320 (+) 1455 WP_038399095.1 glutamate--tRNA ligase -
  DP17_RS07900 (DP17_1603) cysE 1693705..1694334 (+) 630 WP_002438669.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50245.84 Da        Isoelectric Point: 7.5277

>NTDB_id=126338 DP17_RS07885 WP_038399092.1 1688971..1690344(+) (radA) [Staphylococcus epidermidis strain SEI]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKVAHPKHGVKTKETAGKVQKLNSVKHEATPRLLTESKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQNKNVLYITGEESINQTKLRADRLEEDSSHLNVLAETDLEVIHQTVK
EERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILKAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDQAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPQTNIGGWTFPEGIQVVGVSSVHEALKYALHSKQR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=126338 DP17_RS07885 WP_038399092.1 1688971..1690344(+) (radA) [Staphylococcus epidermidis strain SEI]
ATGGCCAAGAAAAAAGTAATATTCGAATGTATGGCATGTGGCTATCAATCTCCTAAGTGGATGGGCAAGTGCCCTAACTG
CGGTGCGTGGAATCAAATGGAAGAAATAGTAGAAAAGGTTGCTCATCCTAAACATGGTGTAAAAACAAAAGAAACAGCAG
GTAAGGTACAAAAGTTAAATAGTGTTAAGCATGAAGCTACCCCTAGATTACTTACAGAATCAAAGGAATTTAACCGTGTT
TTAGGTGGAGGTATTGTAAGTGGTTCGTTAGTACTAATAGGTGGAGACCCAGGTATTGGTAAGTCGACTTTATTGCTACA
AATTTGTGCTGCGCTGTCACAAAATAAGAATGTTTTATATATTACTGGTGAGGAATCTATTAATCAAACTAAGTTGCGCG
CTGATCGTTTAGAAGAAGATTCTAGTCATCTTAATGTTTTAGCTGAAACTGATTTAGAAGTGATACATCAAACTGTAAAA
GAAGAGAGACCTGACTTACTTGTTGTTGATTCGATTCAAACAATCTATCATCCGGAAATTAGTTCCGCACCTGGATCGGT
ATCACAAGTAAGAGAGAGTACGCAGAGTTTAATGAACATTGCTAAACAAATGAATATTGCCACATTTATTGTGGGACACG
TAACAAAAGAAGGACAAATCGCCGGACCGAGATTATTGGAACATATGGTTGATACAGTTCTTTATTTTGAAGGAGATGAG
CATCACGCATATCGTATCCTTAAAGCAGTAAAAAATAGATTTGGTTCTACAAATGAGATGGGGATTTTCGAAATGAAGCA
AAGTGGATTAAAAGGTGTACTTAATCCTTCTGAAATGTTTTTAGAAGAACGTTCTACAAATGTTCCGGGCTCTACAATCG
TCCCCACTATGGAAGGAACAAGACCACTACTCATTGAAGTCCAAGCGCTTGTTACACCAACAACATTTAATAATCCTAGA
CGAATGGCTACAGGTATAGATCATAATCGATTAAGTTTACTTATGGCGGTTCTAGAAAAAAAGGAAAACTATTTACTCCA
ACAACAAGATGCCTATATTAAAGTAGCAGGTGGCGTCAAATTAACAGAACCTGCTGTTGATTTAAGCATTATTGTTGCGA
CAGCTTCAAGTTTTAAAGATCAAGCTGTTGATGGATTAGATTGTTTTGTGGGTGAAGTTGGATTAACAGGTGAAGTACGC
AGAGTATCTCGCATAGAGCAACGTGTTCAAGAAGCGGCCAAACTAGGGTTTAAAAGAGCTATTATTCCACAGACAAATAT
TGGAGGTTGGACATTCCCAGAAGGCATCCAAGTCGTTGGTGTTTCATCAGTACATGAAGCTTTGAAATATGCATTACATT
CAAAACAGCGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

AAA domain (AAA_25)

(71-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

99.781

0.656
  radA Streptococcus pneumoniae Rx1

60.579

98.249

0.595
  radA Streptococcus pneumoniae D39

60.579

98.249

0.595
  radA Streptococcus pneumoniae R6

60.579

98.249

0.595
  radA Streptococcus pneumoniae TIGR4

60.579

98.249

0.595
  radA Streptococcus mitis NCTC 12261

60.579

98.249

0.595
  radA Streptococcus mitis SK321

60.579

98.249

0.595

Multiple sequence alignment