Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | IR04_RS18315 | Genome accession | NZ_CP009042 |
| Coordinates | 2887526..2888044 (-) | Length | 172 a.a. |
| NCBI ID | WP_000792032.1 | Uniprot ID | - |
| Organism | Vibrio cholerae O1 biovar El Tor strain FJ147 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2882526..2893044
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IR04_RS18300 (IR04_18220) | aroB | 2883961..2885046 (-) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
| IR04_RS18305 (IR04_18225) | aroK | 2885074..2885598 (-) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| IR04_RS18310 (IR04_18230) | pilQ | 2885785..2887500 (-) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| IR04_RS18315 (IR04_18235) | pilP | 2887526..2888044 (-) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| IR04_RS18320 (IR04_18240) | pilO | 2888034..2888624 (-) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| IR04_RS18325 (IR04_18245) | pilN | 2888617..2889201 (-) | 585 | WP_000902745.1 | PilN domain-containing protein | Machinery gene |
| IR04_RS18330 (IR04_18250) | pilM | 2889191..2890207 (-) | 1017 | WP_000520444.1 | type IV pilus assembly protein PilM | Machinery gene |
| IR04_RS18335 (IR04_18255) | - | 2890350..2892827 (+) | 2478 | WP_000668733.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19084.25 Da Isoelectric Point: 10.0857
>NTDB_id=126286 IR04_RS18315 WP_000792032.1 2887526..2888044(-) (pilP) [Vibrio cholerae O1 biovar El Tor strain FJ147]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
Nucleotide
Download Length: 519 bp
>NTDB_id=126286 IR04_RS18315 WP_000792032.1 2887526..2888044(-) (pilP) [Vibrio cholerae O1 biovar El Tor strain FJ147]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilP | Vibrio campbellii strain DS40M4 |
56.395 |
100 |
0.564 |