Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AMD06_RS20000 Genome accession   NZ_CP009040
Coordinates   4574731..4575789 (-) Length   352 a.a.
NCBI ID   WP_015472652.1    Uniprot ID   -
Organism   Xanthomonas citri pv. citri strain AW16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4569731..4580789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD06_RS25090 (J168_04051) - 4569998..4570774 (-) 777 WP_080633690.1 hypothetical protein -
  AMD06_RS19980 (J168_04052) - 4570836..4572737 (-) 1902 WP_005911884.1 type IV pilus secretin PilQ family protein -
  AMD06_RS19985 (J168_04053) - 4572757..4573290 (-) 534 WP_003486179.1 pilus assembly protein PilP -
  AMD06_RS19990 (J168_04054) - 4573287..4573952 (-) 666 WP_003486177.1 type 4a pilus biogenesis protein PilO -
  AMD06_RS19995 (J168_04055) - 4573949..4574731 (-) 783 WP_011052240.1 PilN domain-containing protein -
  AMD06_RS20000 (J168_04056) comM 4574731..4575789 (-) 1059 WP_015472652.1 pilus assembly protein PilM Machinery gene
  AMD06_RS20005 (J168_04057) - 4575906..4578428 (+) 2523 WP_011052242.1 penicillin-binding protein 1A -
  AMD06_RS20010 (J168_04058) - 4578786..4579436 (+) 651 WP_011052243.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37593.21 Da        Isoelectric Point: 4.3924

>NTDB_id=126245 AMD06_RS20000 WP_015472652.1 4574731..4575789(-) (comM) [Xanthomonas citri pv. citri strain AW16]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGSRFRLEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=126245 AMD06_RS20000 WP_015472652.1 4574731..4575789(-) (comM) [Xanthomonas citri pv. citri strain AW16]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCGACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAGCCGTTTCCGCCTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCC
GTGGCAGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCTGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAATA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGCCTGACCGCCAAGGTAATGGACGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGCCCTGGTTGCCAGCGAATTGCCGGT
AGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACTGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTCGAAGAGCAGCTCGGTGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCACTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.712

99.716

0.506
  pilM Legionella pneumophila strain ERS1305867

47.009

99.716

0.469

Multiple sequence alignment