Detailed information NTG0125898

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: Y979_RS21275
• Genome accession: NZ_CP011061
• Coordinates: 4311018..4312043 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli str. Sanji
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4306018..4317043

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Y979_RS21245 (Y979_21270)	zapB	4306102..4306347 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
Y979_RS21250 (Y979_21275)	rraA	4306432..4306917 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
Y979_RS21255 (Y979_21280)	menA	4307010..4307936 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
Y979_RS21260 (Y979_21285)	hslU	4308003..4309334 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
Y979_RS21265 (Y979_21290)	hslV	4309344..4309874 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
Y979_RS21270 (Y979_21295)	ftsN	4309967..4310926 (-)	960	WP_000068828.1	cell division protein FtsN	-
Y979_RS21275 (Y979_21300)	cytR	4311018..4312043 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
Y979_RS21280 (Y979_21305)	priA	4312199..4314397 (-)	2199	WP_001333520.1	primosomal protein N'	Machinery gene
Y979_RS21285 (Y979_21310)	rpmE	4314600..4314812 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
Y979_RS21290 (Y979_21315)	yiiX	4314873..4315481 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
Y979_RS21295 (Y979_21320)	metJ	4315665..4315982 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=125898 Y979_RS21275 WP_000644904.1 4311018..4312043(-) (cytR) [Escherichia coli str. Sanji]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=125898 Y979_RS21275 WP_000644904.1 4311018..4312043(-) (cytR) [Escherichia coli str. Sanji]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628