Detailed information NTG0125865

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Y979_RS14290
• Genome accession: NZ_CP011061
• Coordinates: 2909777..2910769 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli str. Sanji
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2904777..2915769

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Y979_RS14270 (Y979_14290)	otnK	2905552..2906814 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
Y979_RS14275 (Y979_14295)	ygbL	2906811..2907449 (+)	639	WP_001278994.1	aldolase	-
Y979_RS14280 (Y979_14300)	ygbM	2907454..2908230 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
Y979_RS14285 (Y979_14305)	ygbN	2908319..2909683 (+)	1365	WP_000104441.1	GntP family transporter	-
Y979_RS14290 (Y979_14310)	rpoS	2909777..2910769 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
Y979_RS14295 (Y979_14315)	nlpD	2910832..2911926 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
Y979_RS14300 (Y979_14320)	pcm	2912111..2912737 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
Y979_RS14305 (Y979_14325)	surE	2912731..2913492 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
Y979_RS14310 (Y979_14330)	truD	2913473..2914522 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
Y979_RS14315 (Y979_14335)	ispF	2914519..2914998 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Y979_RS14320 (Y979_14340)	ispD	2914998..2915708 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=125865 Y979_RS14290 WP_000081550.1 2909777..2910769(-) (rpoS) [Escherichia coli str. Sanji]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=125865 Y979_RS14290 WP_000081550.1 2909777..2910769(-) (rpoS) [Escherichia coli str. Sanji]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715