Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PMK1_RS17440 Genome accession   NZ_CP008929
Coordinates   3603937..3604533 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain PMK1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3598937..3609533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMK1_RS17420 (PMK1_03316) - 3599129..3600886 (-) 1758 WP_020324406.1 Lon protease family protein -
  PMK1_RS17425 (PMK1_03317) matP 3601072..3601524 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  PMK1_RS17430 (PMK1_03318) ompA 3601656..3602726 (-) 1071 WP_002898408.1 porin OmpA -
  PMK1_RS17435 (PMK1_03319) sulA 3603079..3603588 (-) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  PMK1_RS17440 (PMK1_03320) sxy/tfoX 3603937..3604533 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  PMK1_RS17445 (PMK1_03321) yccS 3604547..3606682 (-) 2136 WP_004147856.1 YccS family putative transporter -
  PMK1_RS17450 (PMK1_03322) - 3606700..3607146 (-) 447 WP_002898425.1 YccF domain-containing protein -
  PMK1_RS17455 (PMK1_03323) helD 3607271..3609325 (+) 2055 WP_020324408.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=125858 PMK1_RS17440 WP_004179217.1 3603937..3604533(+) (sxy/tfoX) [Klebsiella pneumoniae strain PMK1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=125858 PMK1_RS17440 WP_004179217.1 3603937..3604533(+) (sxy/tfoX) [Klebsiella pneumoniae strain PMK1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment