Detailed information NTG0125817

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VK74_RS22160
• Genome accession: NZ_CP011018
• Coordinates: 4455756..4456748 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CI5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4450756..4461748

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VK74_RS22130 (VK74_22120)	ispD	4450817..4451527 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VK74_RS22135 (VK74_22125)	ispF	4451527..4452006 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VK74_RS22140 (VK74_22130)	truD	4452003..4453052 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
VK74_RS22145 (VK74_22135)	surE	4453033..4453794 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
VK74_RS22150 (VK74_22140)	pcm	4453788..4454414 (+)	627	WP_032142000.1	protein-L-isoaspartate O-methyltransferase	-
VK74_RS22155 (VK74_22145)	nlpD	4454599..4455693 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
VK74_RS22160 (VK74_22150)	rpoS	4455756..4456748 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
VK74_RS22165 (VK74_22155)	-	4456869..4457276 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
VK74_RS22170 (VK74_22160)	-	4457423..4458016 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
VK74_RS22175 (VK74_22165)	-	4458016..4459443 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
VK74_RS22180 (VK74_22170)	-	4459454..4459690 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
VK74_RS22185 (VK74_22175)	ygbN	4459729..4461093 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=125817 VK74_RS22160 WP_000081550.1 4455756..4456748(+) (rpoS) [Escherichia coli strain CI5]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=125817 VK74_RS22160 WP_000081550.1 4455756..4456748(+) (rpoS) [Escherichia coli strain CI5]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715