Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   VC76_RS07210 Genome accession   NZ_CP011015
Coordinates   1423208..1423804 (-) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain FB1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1418208..1428804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC76_RS07190 (VC76_07245) - 1418963..1419727 (+) 765 WP_002781156.1 TIGR02757 family protein -
  VC76_RS07195 (VC76_07250) - 1419730..1420494 (+) 765 WP_002781157.1 TSUP family transporter -
  VC76_RS07200 (VC76_07255) ctsF 1420491..1421666 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  VC76_RS07205 (VC76_07260) ctsE 1421653..1423215 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  VC76_RS07210 (VC76_07265) ctsX 1423208..1423804 (-) 597 WP_002779313.1 CDC27 family protein Machinery gene
  VC76_RS07215 (VC76_07270) ctsP 1423801..1424397 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  VC76_RS07220 (VC76_07275) ctsD 1424390..1425808 (-) 1419 WP_002833219.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  VC76_RS07225 (VC76_07280) ctsR 1425786..1426097 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=125737 VC76_RS07210 WP_002779313.1 1423208..1423804(-) (ctsX) [Campylobacter coli strain FB1]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=125737 VC76_RS07210 WP_002779313.1 1423208..1423804(-) (ctsX) [Campylobacter coli strain FB1]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434