Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VC76_RS05880 Genome accession   NZ_CP011015
Coordinates   1155484..1155978 (+) Length   164 a.a.
NCBI ID   WP_002784381.1    Uniprot ID   -
Organism   Campylobacter coli strain FB1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1150484..1160978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC76_RS05865 (VC76_05875) - 1151862..1153043 (-) 1182 WP_002788131.1 metal-dependent hydrolase -
  VC76_RS05870 (VC76_05880) - 1153052..1153951 (-) 900 WP_002777349.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  VC76_RS05875 (VC76_05885) gatB 1153951..1155369 (-) 1419 WP_002777351.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  VC76_RS05880 (VC76_05890) luxS 1155484..1155978 (+) 495 WP_002784381.1 S-ribosylhomocysteine lyase Regulator
  VC76_RS05885 (VC76_05895) - 1156295..1157287 (+) 993 WP_002777355.1 isopenicillin N synthase family oxygenase -
  VC76_RS05890 (VC76_05900) - 1157301..1158071 (+) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  VC76_RS05895 (VC76_05905) metE 1158094..1160358 (+) 2265 WP_002777360.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18313.22 Da        Isoelectric Point: 5.0135

>NTDB_id=125723 VC76_RS05880 WP_002784381.1 1155484..1155978(+) (luxS) [Campylobacter coli strain FB1]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGIPDEKSVAKAWEAAMKDILNVSDQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGVMNNEELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=125723 VC76_RS05880 WP_002784381.1 1155484..1155978(+) (luxS) [Campylobacter coli strain FB1]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCGCCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCATACCTGATGAAAAAAGTGTGGCCAAGGCTTGGGAAGCTGC
AATGAAAGATATTTTAAATGTGAGCGATCAAAGTCAAATTCCTGAACTCAATATCTATCAATGTGGAACTTGTGCTATGC
ATTCTTTGGATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTACCATAGGCGTAATGAACAACGAAGAATTAAAA
CTTGAAAATATCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713

Multiple sequence alignment