Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ID09_RS10365 Genome accession   NZ_CP008921
Coordinates   2100254..2101621 (-) Length   455 a.a.
NCBI ID   WP_024390656.1    Uniprot ID   A0A075SKT6
Organism   Streptococcus suis 6407     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2093533..2102611 2100254..2101621 within 0


Gene organization within MGE regions


Location: 2093533..2102611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS10325 (ID09_10600) - 2093533..2093820 (-) 288 WP_024390657.1 hypothetical protein -
  ID09_RS10330 (ID09_10605) - 2093881..2094243 (+) 363 WP_024381187.1 MerR family transcriptional regulator -
  ID09_RS10335 (ID09_10610) gltX 2094281..2095735 (-) 1455 WP_024381188.1 glutamate--tRNA ligase -
  ID09_RS12605 (ID09_10615) - 2096015..2097295 (-) 1281 Protein_2025 MFS transporter -
  ID09_RS10345 (ID09_10620) - 2097382..2098041 (-) 660 WP_024381189.1 LiaF transmembrane domain-containing protein -
  ID09_RS10350 (ID09_10625) - 2098046..2098492 (-) 447 WP_024381190.1 LytTR family DNA-binding domain-containing protein -
  ID09_RS10355 (ID09_10630) - 2098670..2099428 (-) 759 WP_002939965.1 TIGR00266 family protein -
  ID09_RS10360 (ID09_10635) - 2099636..2100130 (-) 495 WP_024381191.1 beta-class carbonic anhydrase -
  ID09_RS10365 (ID09_10640) radA 2100254..2101621 (-) 1368 WP_024390656.1 DNA repair protein RadA Machinery gene
  ID09_RS10370 (ID09_10645) - 2101628..2102161 (-) 534 WP_024381193.1 histidine phosphatase family protein -
  ID09_RS10375 (ID09_10650) - 2102168..2102611 (-) 444 WP_002939955.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49873.40 Da        Isoelectric Point: 6.1911

>NTDB_id=125717 ID09_RS10365 WP_024390656.1 2100254..2101621(-) (radA) [Streptococcus suis 6407]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVLGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPINPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVVGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=125717 ID09_RS10365 WP_024390656.1 2100254..2101621(-) (radA) [Streptococcus suis 6407]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTACCTGGGCCGTTGTCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGACCTATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCTCGCACTAAGACCAACATGGAAGAGTTCAAC
CGCGTCCTCGGTGGCGGCGTGGTGCTGGGCAGTTTGGTCCTGATTGGAGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAACGATTGGGCGACATTGATAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTTCTGATTATCGACTCTATCCAGACCATTATGAGTCCTGACATCTCCAGCGTGCAAGG
ATCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTCATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACTAAGGAAGGAACCCTGGCTGGACCGAGGACCTTGGAGCATATGGTGGATACCGTTCTTTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGTTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTCCTCAATCCTAGCGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCTG
CCATTGTCGTGACCATGGAGGGCACCCGCCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACTATGTTTGGCAAT
GCCAAGCGGACCACGACAGGACTGGATTTCAACCGTGCTAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCAGGCGGGGTCAAACTGGATGAACCAGCCATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAATCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCAAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACTGTTGTCGGCGTGACCACCATTGGCGAAGTCTTACAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SKT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

90.708

99.341

0.901
  radA Streptococcus pneumoniae Rx1

90.487

99.341

0.899
  radA Streptococcus pneumoniae D39

90.487

99.341

0.899
  radA Streptococcus pneumoniae R6

90.487

99.341

0.899
  radA Streptococcus pneumoniae TIGR4

90.487

99.341

0.899
  radA Streptococcus mitis SK321

90.265

99.341

0.897
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622

Multiple sequence alignment