Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ID09_RS09260 Genome accession   NZ_CP008921
Coordinates   1889330..1890064 (-) Length   244 a.a.
NCBI ID   WP_002942356.1    Uniprot ID   G7SIC8
Organism   Streptococcus suis 6407     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1884330..1895064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS09230 (ID09_09475) nusA 1884557..1885699 (-) 1143 WP_024381966.1 transcription termination factor NusA -
  ID09_RS09235 (ID09_09480) rimP 1885773..1886243 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  ID09_RS09245 (ID09_09485) trmB 1886814..1887452 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ID09_RS09250 (ID09_09490) ccrZ 1887449..1888243 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  ID09_RS09255 (ID09_09495) - 1888293..1889333 (-) 1041 WP_024381967.1 ABC transporter permease -
  ID09_RS09260 (ID09_09500) pptA 1889330..1890064 (-) 735 WP_002942356.1 ABC transporter ATP-binding protein Regulator
  ID09_RS09265 (ID09_09505) - 1890127..1890540 (+) 414 WP_012027752.1 HIT family protein -
  ID09_RS09270 (ID09_09510) - 1890542..1890844 (+) 303 WP_024381968.1 hypothetical protein -
  ID09_RS09275 (ID09_09515) - 1890953..1892146 (-) 1194 WP_024381969.1 LCP family protein -
  ID09_RS09280 (ID09_09520) - 1892143..1892670 (-) 528 WP_024381970.1 GNAT family N-acetyltransferase -
  ID09_RS09285 (ID09_09525) tsaE 1892663..1893103 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ID09_RS09290 (ID09_09530) - 1893204..1894868 (-) 1665 WP_024381971.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26832.10 Da        Isoelectric Point: 4.3606

>NTDB_id=125712 ID09_RS09260 WP_002942356.1 1889330..1890064(-) (pptA) [Streptococcus suis 6407]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=125712 ID09_RS09260 WP_002942356.1 1889330..1890064(-) (pptA) [Streptococcus suis 6407]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAGTTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCCGTGGCTATCTCTGACTTGATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACACAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SIC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721

Multiple sequence alignment