Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HZ99_RS12800 Genome accession   NZ_CP008896
Coordinates   2902573..2903940 (-) Length   455 a.a.
NCBI ID   WP_038443512.1    Uniprot ID   A0A379IKR4
Organism   Pseudomonas fluorescens strain UK4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2897573..2908940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ99_RS12780 (HZ99_13080) yjiA 2898585..2899544 (-) 960 WP_038443508.1 GTPase -
  HZ99_RS12785 (HZ99_13085) - 2899695..2899892 (-) 198 WP_038443509.1 YbdD/YjiX family protein -
  HZ99_RS12790 (HZ99_13090) - 2899908..2901974 (-) 2067 WP_038443510.1 carbon starvation CstA family protein -
  HZ99_RS12795 (HZ99_13095) - 2902148..2902516 (+) 369 WP_038443511.1 PilZ domain-containing protein -
  HZ99_RS12800 (HZ99_13100) radA 2902573..2903940 (-) 1368 WP_038443512.1 DNA repair protein RadA Machinery gene
  HZ99_RS12805 (HZ99_13105) - 2903976..2904506 (-) 531 WP_038448061.1 ankyrin repeat domain-containing protein -
  HZ99_RS12810 (HZ99_13110) - 2904625..2906166 (-) 1542 WP_038443513.1 catalase -
  HZ99_RS12815 (HZ99_13115) mscL 2906456..2906872 (+) 417 WP_038443514.1 large-conductance mechanosensitive channel protein MscL -
  HZ99_RS12820 (HZ99_13120) - 2906930..2907706 (-) 777 WP_038443515.1 ferredoxin--NADP reductase -
  HZ99_RS12825 (HZ99_13125) - 2908002..2908712 (+) 711 WP_038443516.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48724.19 Da        Isoelectric Point: 6.9558

>NTDB_id=125522 HZ99_RS12800 WP_038443512.1 2902573..2903940(-) (radA) [Pseudomonas fluorescens strain UK4]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPSGRSGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLHIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=125522 HZ99_RS12800 WP_038443512.1 2902573..2903940(-) (radA) [Pseudomonas fluorescens strain UK4]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGTGGCGAGTG
CGGTGCGTGGAACACCCTCACTGAAACCATGATTGAAAGCGGCGGTGCGGCGGCGCCCAGCGGCCGCTCTGGTTGGACCG
GGCAGCAAGCCCAGATCAAGACCCTGGCTGAAGTCAGTGTCGAAGAAATCCCGCGCTTCTCCACCGCTTCCGGCGAGCTT
GACCGGGTGCTCGGTGGCGGCCTGGTGGATGGCTCGGTGGTCCTGATCGGCGGTGATCCGGGCATCGGCAAATCGACCAT
CCTCCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCCCTGTACGTCACTGGCGAAGAATCCCAGCAACAGGTGG
CCATGCGCGCGCGTCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGTATCGAAAGCATCATTGCC
ACCGCCCGGGTGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAGTCGGCGCC
GGGTGGGGTGTCCCAGGTGCGCGAGAGTGCAGCCTTGCTGGTGCGCTACGCGAAACAGAGTGGCACGGCGATTTTCCTGG
TGGGCCATGTCACCAAGGAAGGCGCATTGGCCGGCCCGCGCGTGTTGGAGCATATGGTCGATACGGTGTTGTATTTCGAG
GGGGAGTCCGACGGGCGCCTGCGTCTGTTGCGGGCGGTGAAAAACCGTTTTGGTGCGGTCAACGAACTGGGGGTGTTTGC
CATGACGGACCGGGGGCTGAAAGAAGTCTCCAACCCTTCGGCGATCTTTCTGACCCGCGCCCAGGAAGAGGTGCCGGGCA
GCGTGGTAATGGCGACGTGGGAGGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCCCTGGTGGACGATAGCCATCTGGCC
AACCCCCGCCGCGTGACCCTGGGCCTGGATCAGAACCGCCTGGCGATGTTGCTGGCGGTGCTGCATCGCCACGGCGGGAT
TCCCACCCACGACCAGGACGTGTTTCTCAACGTGGTCGGCGGCGTCAAGGTGCTGGAAACCGCGTCGGACCTGGCATTGA
TGGCGGCAGTGATGTCGAGCCTGCGCAATCGGCCACTGCCCCACGACCTGCTGGTGTTTGGCGAGGTGGGCCTGTCGGGT
GAAGTGCGTCCAGTGCCCAGCGGCCAGGAGCGTCTGAAGGAGGCGGCCAAGCATGGCTTCAAGCGGGCTATCGTGCCTAA
AGGCAATGCGCCGAAGGAGGCGCCGCCGGGGTTGCACATTATTGCGGTGACGCGCCTGGAACAGGCCCTGGATGCGCTAT
TCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379IKR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464

Multiple sequence alignment