Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   B723_RS30170 Genome accession   NZ_CP010945
Coordinates   6627566..6628996 (-) Length   476 a.a.
NCBI ID   WP_017340495.1    Uniprot ID   -
Organism   Pseudomonas fluorescens NCIMB 11764     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6622566..6633996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B723_RS30140 (B723_30195) - 6622675..6623796 (+) 1122 WP_017340490.1 glycosyltransferase family 1 protein -
  B723_RS30145 (B723_30200) - 6623789..6624565 (+) 777 WP_017340491.1 polysaccharide deacetylase family protein -
  B723_RS30150 (B723_30205) - 6624562..6625557 (+) 996 WP_017340492.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  B723_RS33875 (B723_30210) - 6625636..6625827 (-) 192 WP_017340493.1 hypothetical protein -
  B723_RS30160 (B723_30215) purU 6625913..6626761 (-) 849 WP_017340494.1 formyltetrahydrofolate deformylase -
  B723_RS30165 (B723_30220) mvaT 6627101..6627478 (+) 378 WP_007933316.1 histone-like nucleoid-structuring protein MvaT -
  B723_RS30170 (B723_30225) sbcB 6627566..6628996 (-) 1431 WP_017340495.1 exodeoxyribonuclease I Machinery gene
  B723_RS30175 (B723_30230) - 6629181..6629906 (+) 726 WP_017340496.1 RDD family protein -
  B723_RS30180 (B723_30235) - 6629903..6630880 (+) 978 WP_017340497.1 stage II sporulation protein M -
  B723_RS30185 (B723_30240) - 6630867..6632411 (+) 1545 WP_017340498.1 DUF4129 domain-containing protein -
  B723_RS30190 (B723_30245) - 6632408..6633571 (+) 1164 WP_031319090.1 DUF4350 domain-containing protein -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 54593.93 Da        Isoelectric Point: 5.6773

>NTDB_id=125503 B723_RS30170 WP_017340495.1 6627566..6628996(-) (sbcB) [Pseudomonas fluorescens NCIMB 11764]
MTSIFWYDYETTGINPRCDRPLQVAGLRTDFDLNVIDEPVNLYCQPSEDILPHPAACAITGITPGQLAGHGLSEADFMTR
VHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRAAYALRPDGLVWPKDDEGRVTLKLE
RLTAANGIDHGNAHEALSDVRATIALARLIREKQPKLYDWLFQLRGKQKVMDQIRLLQPMVHISGRFSAARSYVGVVLPL
AWHPRNKNALIVCDLHLDPQGLLDLDADALRQRLYTRRDDLAEGELPVPLKLIHINKCPVVAPLSVLRPVDQQRLGLDMA
LYQERTLRLSDAQQVWRDKVQAIYASEDFTQSKDPEQQLYDGFIGDRDRRLCEQVRAADPAQLAKVQWPFDDERLPELLF
RYRARNFPDTLSFEEQERWRIFCQQRLSDPEWGAPNTLETFAEAAAHLNITATPFQQEVLNEWSNYVQALRKRLNL

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=125503 B723_RS30170 WP_017340495.1 6627566..6628996(-) (sbcB) [Pseudomonas fluorescens NCIMB 11764]
GTGACCTCGATCTTCTGGTACGACTATGAAACCACCGGCATCAACCCCCGTTGCGACCGTCCGCTGCAAGTGGCGGGCCT
TCGCACTGACTTCGATCTCAATGTCATCGACGAGCCGGTCAATCTTTACTGCCAGCCCAGCGAGGACATCCTGCCGCATC
CGGCGGCTTGCGCGATCACTGGCATCACACCGGGCCAATTGGCCGGGCACGGTTTGAGCGAAGCGGATTTCATGACCCGG
GTGCATGCCCAACTGGCGGCGCCGGGCACGTGTGGCGCGGGTTACAACACCTTGCGCTTCGACGACGAGATGACTCGTTA
CAGCCTGTATCGCAATTTTTTCGACCCGTACGCGCGCGAGTGGCAGGGCGGTAACAGTCGTTGGGATTTGATCGACGTGG
TGCGCGCCGCCTATGCCTTGCGTCCGGATGGCCTCGTCTGGCCCAAGGATGACGAGGGGCGGGTAACGCTCAAACTCGAA
CGCCTGACCGCCGCCAATGGCATCGATCACGGCAATGCTCACGAAGCGCTGTCGGACGTTCGAGCGACCATTGCGCTGGC
GCGTCTGATTCGAGAGAAACAACCGAAGCTGTACGACTGGCTGTTTCAGTTGCGCGGTAAACAAAAAGTGATGGATCAGA
TTCGGCTGTTGCAGCCGATGGTGCACATTTCCGGGCGCTTTTCGGCCGCACGCAGTTATGTCGGCGTGGTGCTGCCGCTG
GCCTGGCACCCGCGCAACAAGAACGCGTTGATTGTCTGCGACTTGCACCTGGATCCCCAGGGCTTGCTTGATCTGGATGC
TGACGCCTTGCGCCAGCGCCTGTATACCCGTCGCGATGATCTGGCCGAGGGCGAGTTGCCGGTGCCGCTCAAGCTTATCC
ACATCAACAAATGCCCGGTGGTCGCGCCCCTGTCGGTACTTCGTCCCGTTGATCAGCAACGCCTGGGGCTGGACATGGCG
TTATATCAGGAGCGCACGCTGCGGCTAAGTGACGCACAGCAAGTTTGGCGAGATAAAGTTCAGGCCATTTATGCCAGCGA
GGATTTCACCCAGAGCAAAGACCCCGAGCAACAGTTATACGATGGTTTTATTGGTGATCGGGATCGGCGCCTTTGTGAGC
AAGTCCGGGCAGCTGACCCGGCGCAATTAGCAAAGGTACAATGGCCTTTCGATGATGAACGTTTACCCGAATTATTGTTT
CGATATCGAGCACGTAACTTTCCCGACACGTTGAGTTTCGAAGAGCAAGAACGTTGGCGAATATTCTGTCAGCAACGTTT
GTCAGATCCTGAGTGGGGAGCGCCCAATACGCTGGAAACTTTTGCAGAGGCCGCAGCCCACTTGAACATTACGGCGACGC
CATTCCAGCAAGAGGTGCTCAACGAGTGGAGCAATTATGTCCAGGCATTGCGCAAACGTTTGAATCTTTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(205-468)

Exonuclease (RNase_T)

(6-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

45.435

98.95

0.45