Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HY59_RS08295 Genome accession   NZ_CP008886
Coordinates   1783790..1784413 (+) Length   207 a.a.
NCBI ID   WP_004860161.1    Uniprot ID   A0AAP1QFX2
Organism   Raoultella ornithinolytica strain A14     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778790..1789413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HY59_RS08275 (HY59_08420) - 1778893..1780650 (-) 1758 WP_065906239.1 AAA family ATPase -
  HY59_RS08280 (HY59_08425) matP 1780836..1781288 (+) 453 WP_004860155.1 macrodomain Ter protein MatP -
  HY59_RS08285 (HY59_08430) ompA 1781396..1782466 (-) 1071 WP_044346506.1 porin OmpA -
  HY59_RS08290 (HY59_08435) sulA 1782819..1783328 (-) 510 WP_004860159.1 SOS-induced cell division inhibitor SulA -
  HY59_RS08295 (HY59_08440) sxy/tfoX 1783790..1784413 (+) 624 WP_004860161.1 TfoX/Sxy family DNA transformation protein Regulator
  HY59_RS08300 (HY59_08445) yccS 1784401..1786536 (-) 2136 WP_004860163.1 YccS family putative transporter -
  HY59_RS08305 (HY59_08450) - 1786554..1787000 (-) 447 WP_004860167.1 YccF domain-containing protein -
  HY59_RS08310 (HY59_08455) helD 1787123..1789177 (+) 2055 WP_032717632.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23307.87 Da        Isoelectric Point: 9.5421

>NTDB_id=125460 HY59_RS08295 WP_004860161.1 1783790..1784413(+) (sxy/tfoX) [Raoultella ornithinolytica strain A14]
MKKISSLRFHQLQECLSPLGKISCRPLFGGYSLAIDDTVFAMVAEGEIYLKICEQSAEYRVVHATPLLTMRKNGRPVLLK
YYQVDETLWGDSKTLFNLSASSLQSARNEKHRQRASGRLKDLPNISFHMELLLINAGVSDENMLRQFGAEKVWLKLRESN
KALTLNVLYALEGAIAGVHSAALPTQRRQELKVWADSQHKSIDAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=125460 HY59_RS08295 WP_004860161.1 1783790..1784413(+) (sxy/tfoX) [Raoultella ornithinolytica strain A14]
ATGAAGAAAATTTCATCTTTACGGTTCCATCAACTCCAGGAATGTTTATCTCCACTCGGCAAAATAAGCTGTCGCCCGCT
CTTTGGGGGCTATAGCCTTGCCATAGACGATACCGTTTTTGCCATGGTTGCCGAGGGCGAAATCTATCTTAAAATTTGTG
AGCAGAGCGCGGAATATCGCGTTGTGCATGCTACCCCTCTTTTGACGATGCGGAAAAATGGTCGCCCGGTATTACTGAAA
TATTATCAGGTTGACGAGACTCTCTGGGGGGATAGCAAAACGCTTTTCAATCTATCGGCGTCCTCATTACAAAGTGCACG
TAATGAAAAGCACCGACAGCGCGCGTCCGGAAGATTAAAAGATCTCCCGAACATCAGTTTTCACATGGAGCTGCTGTTGA
TTAACGCGGGCGTGAGCGATGAAAACATGCTCCGTCAGTTTGGTGCAGAGAAAGTCTGGCTGAAATTGCGCGAGTCAAAT
AAAGCCCTCACCCTGAATGTTCTCTATGCGCTGGAAGGCGCGATTGCCGGCGTGCATTCCGCAGCGCTCCCGACGCAGCG
GCGTCAGGAGCTTAAGGTTTGGGCCGACAGCCAGCACAAGAGTATCGATGCTTACTCGGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.792

95.169

0.502

Multiple sequence alignment