Detailed information NTG0125453

Bioinformatically predicted

Overview

• Name: rcrP
• Type: Regulator
• Locus tag: GS08_RS09840
• Genome accession: NZ_CP008885
• Coordinates: 2341751..2343622 (-)
• Length: 623 a.a.
• NCBI ID: WP_013141460.1
• Uniprot ID: A0A7U4Z647
• Organism: Bifidobacterium longum strain BXY01
• Function: regulate competence (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2343809..2370938	2341751..2343622	flank	187

Gene organization within MGE regions

Location: 2341751..2370938

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GS08_RS09840 (GS08_10115)	rcrP	2341751..2343622 (-)	1872	WP_013141460.1	ABC transporter ATP-binding protein	Regulator
GS08_RS09845 (GS08_10120)	-	2343809..2344330 (-)	522	WP_007052942.1	MarR family winged helix-turn-helix transcriptional regulator	-
GS08_RS09850	-	2344692..2345255 (+)	564	WP_007055052.1	BRO family protein	-
GS08_RS09855 (GS08_10130)	-	2345751..2348855 (-)	3105	WP_371818283.1	bacterial Ig-like domain-containing protein	-
GS08_RS12315	-	2349160..2349225 (-)	66	WP_349816200.1	hypothetical protein	-
GS08_RS09860 (GS08_10135)	-	2349799..2354340 (-)	4542	WP_013141463.1	exo-beta-1,6-galactobiohydrolase	-
GS08_RS09865 (GS08_10140)	-	2354644..2356140 (-)	1497	WP_013141464.1	RNA-binding domain-containing protein	-
GS08_RS09870 (GS08_10145)	-	2356480..2358003 (-)	1524	WP_013141465.1	amino acid permease	-
GS08_RS09875 (GS08_10150)	-	2358329..2359534 (-)	1206	WP_013141466.1	ROK family transcriptional regulator	-
GS08_RS12025 (GS08_10155)	-	2359726..2360726 (-)	1001	Protein_1961	IS3 family transposase	-
GS08_RS09885 (GS08_10160)	istA	2360878..2362188 (+)	1311	WP_080515312.1	IS21 family transposase	-
GS08_RS09890 (GS08_10165)	istB	2362188..2362958 (+)	771	WP_038426051.1	IS21-like element helper ATPase IstB	-
GS08_RS09900 (GS08_10175)	-	2363511..2366540 (-)	3030	WP_013141467.1	alpha-mannosidase	-
GS08_RS09905 (GS08_10180)	-	2366597..2367481 (-)	885	WP_038426053.1	carbohydrate ABC transporter permease	-
GS08_RS09910 (GS08_10185)	-	2367474..2368349 (-)	876	WP_013141468.1	carbohydrate ABC transporter permease	-
GS08_RS09915 (GS08_10190)	-	2368448..2369812 (-)	1365	WP_013141469.1	extracellular solute-binding protein	-
GS08_RS09920 (GS08_10195)	-	2369978..2370211 (-)	234	WP_013141470.1	transposase	-
GS08_RS12030	-	2370231..2370494 (-)	264	WP_230473965.1	IS3 family transposase	-
GS08_RS12035 (GS08_10200)	-	2370645..2370938 (-)	294	WP_013141471.1	IS3 family transposase	-

Sequence

Protein

• Length: 623 a.a.
• Molecular weight: 67927.42 Da
• Isoelectric Point: 5.1908

>NTDB_id=125453 GS08_RS09840 WP_013141460.1 2341751..2343622(-) (rcrP) [Bifidobacterium longum strain BXY01]
MFRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGKMLLISLGSVACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITVMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQDAKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVKNGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGEAAEGADIPA
EQLNRVKAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide

• Length: 1872 bp

>NTDB_id=125453 GS08_RS09840 WP_013141460.1 2341751..2343622(-) (rcrP) [Bifidobacterium longum strain BXY01]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCCCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAGACGCCGGGCAGCGACATGAAGGACA
TCTGGATCGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGTGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCCGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAGATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGTTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGCCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCGTCATGATGGCCATGGTCATGCCGAAGTTCAAGGCGATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAATGCCGAGG
ACTACCAGGACGCCAAATTCACCAAGGCCAACAAGGACCTCACCGAGACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGTTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCTTACCTCATCGACGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTGCTCGACACCGAG
CCGATCGTCAAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGCCAGAGGGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGGCCGATA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCGAGGCCGCGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAAGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

• ABC transporter transmembrane region (ABC_membrane) (54-292)

• ABC transporter (ABC_tran) (359-543)

3D structure

• AlphaFold DB: A0A7U4Z647

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rcrP	Streptococcus mutans UA159	48.815	100	0.496