Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   B723_RS07470 Genome accession   NZ_CP010945
Coordinates   1616404..1616931 (+) Length   175 a.a.
NCBI ID   WP_017336123.1    Uniprot ID   -
Organism   Pseudomonas fluorescens NCIMB 11764     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1611404..1621931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B723_RS07450 (B723_07470) - 1611501..1613939 (-) 2439 WP_031318294.1 penicillin-binding protein 1A -
  B723_RS07455 (B723_07475) comM 1614157..1615221 (+) 1065 WP_017336120.1 pilus assembly protein PilM Machinery gene
  B723_RS07460 (B723_07480) - 1615221..1615787 (+) 567 WP_017336121.1 PilN domain-containing protein -
  B723_RS07465 (B723_07485) pilO 1615784..1616407 (+) 624 WP_017336122.1 type 4a pilus biogenesis protein PilO Machinery gene
  B723_RS07470 (B723_07490) pilP 1616404..1616931 (+) 528 WP_017336123.1 pilus assembly protein PilP Machinery gene
  B723_RS07475 (B723_07495) pilQ 1616945..1619038 (+) 2094 WP_017336124.1 type IV pilus secretin PilQ Machinery gene
  B723_RS07480 (B723_07500) aroK 1619043..1619561 (+) 519 WP_017336125.1 shikimate kinase AroK -
  B723_RS07485 (B723_07505) aroB 1619713..1620813 (+) 1101 WP_017336126.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19319.09 Da        Isoelectric Point: 9.4221

>NTDB_id=125451 B723_RS07470 WP_017336123.1 1616404..1616931(+) (pilP) [Pseudomonas fluorescens NCIMB 11764]
MTPMRFIPMIGILVVLAGCGGDTDFRDLDAYMNEMRLRAPGRIEPTPTFRSYPTFTYNAANLRSPFSRQVKVDLAGQKHG
SRNVKPDPNRVKQYLEGFNIEQFEMVGTISNAAGSFALLRGAGGVHRLKVGDYLGRNDGRIVAISGSQVDVVEIVPDGEG
AWLERPRTIPLKEHS

Nucleotide


Download         Length: 528 bp        

>NTDB_id=125451 B723_RS07470 WP_017336123.1 1616404..1616931(+) (pilP) [Pseudomonas fluorescens NCIMB 11764]
ATGACCCCGATGCGTTTTATCCCGATGATCGGAATACTGGTCGTTCTGGCCGGTTGTGGCGGCGACACTGACTTCCGCGA
CCTGGACGCGTACATGAACGAAATGCGCCTGCGTGCACCGGGCAGGATTGAACCAACGCCGACATTCCGGTCTTACCCAA
CGTTCACCTACAACGCCGCTAACCTGCGCAGTCCCTTTTCCCGGCAGGTCAAGGTCGACCTGGCTGGCCAGAAACACGGC
TCACGCAACGTCAAGCCTGATCCCAACCGGGTCAAGCAGTACCTCGAAGGTTTCAACATCGAGCAGTTTGAAATGGTCGG
CACGATCTCCAATGCGGCTGGCTCCTTTGCGCTGTTGCGCGGGGCAGGCGGTGTGCATCGGTTGAAGGTCGGCGATTACC
TGGGACGTAACGATGGCCGGATCGTTGCCATCAGCGGCTCGCAAGTCGATGTGGTCGAAATCGTTCCTGACGGCGAAGGC
GCCTGGCTGGAACGGCCGCGGACCATCCCTTTGAAAGAGCACTCATAG

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(27-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

38.415

93.714

0.36