Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   B723_RS02900 Genome accession   NZ_CP010945
Coordinates   630694..631059 (-) Length   121 a.a.
NCBI ID   WP_008068134.1    Uniprot ID   A0ABX8EVG4
Organism   Pseudomonas fluorescens NCIMB 11764     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 625694..636059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B723_RS02890 (B723_02895) - 627975..630032 (-) 2058 WP_017341263.1 methyl-accepting chemotaxis protein -
  B723_RS02895 (B723_02900) - 630135..630683 (-) 549 WP_017341264.1 chemotaxis protein CheW -
  B723_RS02900 (B723_02905) pilH 630694..631059 (-) 366 WP_008068134.1 twitching motility response regulator PilH Machinery gene
  B723_RS02905 (B723_02910) pilG 631120..631524 (-) 405 WP_017341265.1 twitching motility response regulator PilG Regulator
  B723_RS02910 (B723_02915) gshB 631760..632713 (+) 954 WP_017341266.1 glutathione synthase -
  B723_RS02915 (B723_02920) - 632791..633687 (+) 897 WP_017341267.1 energy transducer TonB -
  B723_RS02920 (B723_02925) - 633930..634502 (+) 573 WP_017341268.1 YqgE/AlgH family protein -
  B723_RS02925 (B723_02930) ruvX 634502..634939 (+) 438 WP_003195067.1 Holliday junction resolvase RuvX -
  B723_RS02930 (B723_02935) pyrR 635023..635526 (+) 504 WP_008026190.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13310.28 Da        Isoelectric Point: 4.9246

>NTDB_id=125422 B723_RS02900 WP_008068134.1 630694..631059(-) (pilH) [Pseudomonas fluorescens NCIMB 11764]
MARILIVDDSPTEMYKLTGMLEKHGHEVLKAENGADGVALARQEKPDAVLMDIVMPGLNGFQATRQLTKDPETGHIPVII
ITTKDQETDKVWGTRQGAKDYLTKPVDEETLIKTLNNVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=125422 B723_RS02900 WP_008068134.1 630694..631059(-) (pilH) [Pseudomonas fluorescens NCIMB 11764]
ATGGCACGAATTCTGATCGTCGATGATTCGCCGACTGAAATGTACAAACTGACCGGCATGCTGGAAAAGCACGGTCATGA
AGTATTGAAAGCCGAAAACGGCGCCGACGGCGTAGCACTTGCCCGTCAGGAAAAACCCGACGCGGTGCTGATGGACATCG
TCATGCCCGGCCTCAACGGTTTCCAGGCGACCCGCCAACTGACCAAAGACCCGGAAACCGGGCACATCCCGGTGATCATC
ATCACCACCAAGGACCAGGAAACCGACAAGGTCTGGGGCACGCGCCAGGGCGCCAAGGACTACCTGACCAAGCCGGTCGA
CGAAGAAACCCTGATCAAGACCCTGAACAACGTACTGGCCGGTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364

Multiple sequence alignment