Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GZ22_RS17010 Genome accession   NZ_CP008876
Coordinates   3421341..3422717 (+) Length   458 a.a.
NCBI ID   WP_038565099.1    Uniprot ID   A0A075LNI7
Organism   Terribacillus goriensis strain MP602     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3416341..3427717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ22_RS16990 (GZ22_17635) - 3416664..3417122 (+) 459 WP_038565092.1 CtsR family transcriptional regulator -
  GZ22_RS16995 (GZ22_17640) - 3417143..3417685 (+) 543 WP_038565093.1 UvrB/UvrC motif-containing protein -
  GZ22_RS17000 (GZ22_17645) - 3417685..3418752 (+) 1068 WP_038565095.1 protein arginine kinase -
  GZ22_RS17005 (GZ22_17650) clpC 3418773..3421202 (+) 2430 WP_038565097.1 ATP-dependent protease ATP-binding subunit ClpC -
  GZ22_RS17010 (GZ22_17655) radA 3421341..3422717 (+) 1377 WP_038565099.1 DNA repair protein RadA Machinery gene
  GZ22_RS17015 (GZ22_17660) - 3422890..3423999 (+) 1110 WP_038565101.1 PIN/TRAM domain-containing protein -
  GZ22_RS17020 (GZ22_17665) ispD 3424092..3424769 (+) 678 WP_038565104.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GZ22_RS17025 (GZ22_17670) ispF 3424784..3425260 (+) 477 WP_038565107.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GZ22_RS17030 (GZ22_17675) gltX 3425285..3426754 (+) 1470 WP_038565109.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49965.27 Da        Isoelectric Point: 7.1874

>NTDB_id=125398 GZ22_RS17010 WP_038565099.1 3421341..3422717(+) (radA) [Terribacillus goriensis strain MP602]
MAKRKTKYVCQECGYESAKWMGKCPSCNNWNTFTEEVVTPASSAAFRHSNTTTTAAKPQSITAIHSEKEPRVTTDLPEFN
RVLGGGIVAGSLVLIGGDPGIGKSTLLLQVSAQLAEKELPVLYISGEESARQTKLRADRLGVKADQLYVLSETNLQDITR
HIEEVKPAFVVVDSIQTVYREEVTSAPGSVTQVRECTSELMRVAKTNGIPIFLVGHVTKEGAIAGPRMLEHMVDAVLYFE
GERHHTFRILRSVKNRFGSTNEMGIFEMKEEGLREVTNPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPTSFG
NPRRMATGTDHNRVPLLMAVLEKRVGLMLQNQDAYVKIAGGMRLDEPAIDLAVAASIASSFKDKPTKPDDVLIGEVGLTG
EVRRVSRIEQRVQEAAKLGFKRAIVPKKNLDGWTVPSSIKVVGVNSVSEALHIVLGED

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=125398 GZ22_RS17010 WP_038565099.1 3421341..3422717(+) (radA) [Terribacillus goriensis strain MP602]
TTGGCAAAAAGAAAGACAAAGTATGTATGTCAGGAATGCGGATATGAATCCGCCAAGTGGATGGGCAAATGCCCGAGCTG
CAATAATTGGAATACCTTTACGGAAGAAGTTGTTACACCGGCTAGCAGCGCAGCCTTCCGTCATTCAAATACAACAACAA
CAGCTGCAAAGCCTCAGTCGATTACAGCTATTCACTCCGAAAAGGAACCAAGAGTAACAACGGATCTCCCGGAGTTCAAC
AGGGTGCTCGGCGGCGGAATCGTAGCAGGATCGCTTGTGCTTATCGGGGGTGACCCTGGTATCGGTAAATCTACCTTGCT
TTTGCAAGTCAGTGCACAGCTGGCAGAGAAGGAATTGCCGGTTCTGTATATTTCCGGAGAGGAATCAGCCCGTCAGACGA
AACTCCGAGCAGATCGTCTCGGTGTAAAGGCAGATCAGCTCTATGTGTTATCAGAGACAAATCTGCAGGACATCACACGG
CATATTGAAGAAGTGAAGCCGGCGTTTGTTGTAGTCGATTCCATTCAGACCGTGTATCGGGAAGAAGTCACCAGCGCACC
AGGAAGTGTTACGCAGGTACGGGAATGTACAAGTGAGCTGATGCGGGTTGCTAAGACAAATGGCATTCCGATTTTCCTCG
TTGGTCATGTAACGAAAGAAGGCGCCATCGCCGGTCCTAGAATGCTTGAACATATGGTGGATGCGGTTCTTTATTTCGAA
GGGGAACGTCATCATACATTCCGAATCTTGCGAAGTGTAAAGAACCGGTTTGGAAGTACGAATGAAATGGGTATCTTCGA
GATGAAGGAAGAAGGATTAAGGGAAGTGACGAATCCGTCTGAAATCTTCCTGGAGGAAAGATCGCAGGGGGCAGCTGGAT
CTACAGTTGTAGCGTCGATGGAAGGGACACGCCCTGTTCTTGTCGAGATTCAGGCGCTTATCTCTCCTACAAGCTTCGGA
AACCCACGCCGTATGGCTACCGGTACAGATCATAACCGGGTGCCGCTTTTAATGGCGGTGCTTGAGAAACGGGTTGGACT
TATGCTGCAGAATCAAGATGCATACGTCAAGATTGCCGGCGGTATGCGATTGGACGAGCCTGCCATCGATTTGGCGGTAG
CTGCCAGTATCGCATCCAGCTTTAAGGACAAGCCGACCAAGCCAGATGATGTCTTGATCGGGGAAGTGGGTTTGACAGGT
GAAGTGAGACGCGTATCCAGGATTGAACAGCGTGTCCAAGAAGCGGCTAAGCTCGGCTTCAAGCGAGCAATCGTACCGAA
GAAGAATTTGGATGGCTGGACGGTCCCGTCAAGTATTAAAGTAGTTGGAGTCAACTCTGTTAGTGAAGCACTTCATATTG
TTTTGGGAGAGGATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(358-429)

AAA domain (AAA_25)

(74-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075LNI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.856

100

0.74
  radA Streptococcus pneumoniae Rx1

61.099

99.345

0.607
  radA Streptococcus pneumoniae D39

61.099

99.345

0.607
  radA Streptococcus pneumoniae R6

61.099

99.345

0.607
  radA Streptococcus pneumoniae TIGR4

61.099

99.345

0.607
  radA Streptococcus mitis NCTC 12261

61.099

99.345

0.607
  radA Streptococcus mitis SK321

61.099

99.345

0.607

Multiple sequence alignment