Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   UC78_RS05735 Genome accession   NZ_CP010906
Coordinates   1118427..1118921 (+) Length   164 a.a.
NCBI ID   WP_002870821.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 35925     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1113427..1123921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC78_RS05720 (UC78_1146) - 1114813..1115991 (-) 1179 WP_002859276.1 metal-dependent hydrolase -
  UC78_RS05725 (UC78_1147) gpsA 1116001..1116897 (-) 897 WP_074468983.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  UC78_RS05730 (UC78_1148) gatB 1116894..1118312 (-) 1419 WP_044306131.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  UC78_RS05735 (UC78_1149) luxS 1118427..1118921 (+) 495 WP_002870821.1 S-ribosylhomocysteine lyase Regulator
  UC78_RS05740 (UC78_1150) - 1119232..1120224 (+) 993 WP_002853499.1 isopenicillin N synthase family dioxygenase -
  UC78_RS05745 (UC78_1151) - 1120235..1121005 (+) 771 WP_044306132.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  UC78_RS05750 (UC78_1152) metE 1121017..1123281 (+) 2265 WP_044306133.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18285.25 Da        Isoelectric Point: 6.3290

>NTDB_id=125384 UC78_RS05735 WP_002870821.1 1118427..1118921(+) (luxS) [Campylobacter jejuni subsp. jejuni strain 35925]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=125384 UC78_RS05735 WP_002870821.1 1118427..1118921(+) (luxS) [Campylobacter jejuni subsp. jejuni strain 35925]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGCACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGGGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGTGCCATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

98.171

0.701

Multiple sequence alignment