Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GZ22_RS08575 Genome accession   NZ_CP008876
Coordinates   1703573..1705297 (-) Length   574 a.a.
NCBI ID   WP_038561170.1    Uniprot ID   A0A075LK72
Organism   Terribacillus goriensis strain MP602     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1698573..1710297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ22_RS08560 (GZ22_08915) - 1699906..1700838 (-) 933 WP_038561163.1 DMT family transporter -
  GZ22_RS08565 (GZ22_08920) spo0A 1701122..1701907 (-) 786 WP_038561165.1 sporulation transcription factor Spo0A -
  GZ22_RS08570 (GZ22_08925) spoIVB 1702149..1703414 (-) 1266 WP_038561168.1 SpoIVB peptidase -
  GZ22_RS08575 (GZ22_08930) recN 1703573..1705297 (-) 1725 WP_038561170.1 DNA repair protein RecN Machinery gene
  GZ22_RS08580 (GZ22_08935) argR 1705322..1705771 (-) 450 WP_038561172.1 transcriptional regulator ArgR -
  GZ22_RS08585 (GZ22_08940) - 1705764..1706621 (-) 858 WP_038561174.1 TlyA family RNA methyltransferase -
  GZ22_RS08590 (GZ22_08945) dxs 1706626..1708521 (-) 1896 WP_038561177.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GZ22_RS08595 (GZ22_08950) - 1708811..1709698 (-) 888 WP_038561180.1 polyprenyl synthetase family protein -
  GZ22_RS08600 (GZ22_08955) - 1709699..1709932 (-) 234 WP_038561183.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64805.20 Da        Isoelectric Point: 4.8121

>NTDB_id=125372 GZ22_RS08575 WP_038561170.1 1703573..1705297(-) (recN) [Terribacillus goriensis strain MP602]
MLTELSIKDFAIIDQIRIHFKEGLTVLTGETGAGKSIVIDAVQLLSGGRGSVEFIRHGQKKAELEGLFIIDSPDHPIYAI
GAQFGVDIDDGMVVLERTMTTSGKSICRVNGKLVTLAILREFGKSLIDIHTQHETQSLMDADKHIELLDLYDAEAIGKAR
EAYMLQFKELQKLKKRYKEWNTNEQEMAQRLDLLKFQYNELKEAELQPGEDEQLTEERTKLMNYERIYQSLHDAYNALYG
EQKGLDWVGHALASLESASSYDDDIQKHHQMISEQYYLMEDLTFQLSSQLDSLSYNPERLNEIEMRLNEISRLKKKYGQS
VEEILEYAASIEDQIDQIQNRDSHIHQLEQQIEDLGEDAMLEAKQLHDLRVQAAVQLTDAIHEELKDLYLEKARFHVDVQ
LKNGNSGDPEMNGKPVQLTADGFDAITFHISTNPGEPLKELHKVASGGELSRIMLALKRIFSRHQGVTSVIFDEVDTGVS
GRVAQAIGEKIYGISVGSQVLCITHLPQVASMADTHLLIEKHVENNSTHTSVTELGQDTAVEEISRMMTGTVLTEKTKEH
ARELITLAGQYKQS

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=125372 GZ22_RS08575 WP_038561170.1 1703573..1705297(-) (recN) [Terribacillus goriensis strain MP602]
ATGCTTACAGAACTTTCGATTAAGGATTTTGCAATTATTGACCAAATACGGATACATTTTAAAGAAGGGCTTACTGTGCT
GACTGGAGAAACGGGAGCAGGTAAGTCTATTGTCATTGATGCAGTCCAGCTGCTTAGCGGCGGAAGAGGGTCGGTTGAAT
TCATCCGCCACGGTCAGAAAAAAGCCGAGCTGGAAGGCCTTTTTATCATTGACTCACCTGATCACCCTATTTATGCTATT
GGTGCTCAGTTTGGTGTGGATATTGATGATGGAATGGTTGTGCTGGAGCGTACCATGACGACAAGCGGAAAAAGTATTTG
TCGTGTAAATGGCAAGCTGGTGACTTTGGCTATATTACGTGAATTCGGCAAGTCATTAATCGATATTCATACGCAGCACG
AAACCCAATCTTTAATGGATGCAGATAAGCATATAGAGCTTTTGGATTTGTACGATGCAGAAGCGATTGGTAAAGCAAGG
GAAGCCTATATGCTTCAATTCAAAGAACTTCAAAAATTGAAAAAACGCTACAAAGAATGGAATACCAATGAACAGGAAAT
GGCCCAGCGTCTTGACTTACTTAAATTTCAATACAATGAATTGAAAGAAGCGGAACTTCAGCCTGGTGAAGACGAACAGC
TTACAGAAGAGCGTACAAAGCTAATGAATTATGAACGAATTTATCAATCGCTTCATGATGCGTATAACGCACTTTACGGT
GAGCAAAAAGGATTGGACTGGGTAGGGCATGCTTTAGCTAGTCTTGAATCGGCTAGTTCCTATGATGATGATATACAGAA
GCACCATCAGATGATCAGTGAACAATATTATCTGATGGAGGATCTCACATTCCAGCTGAGCAGTCAGCTTGATTCGCTTT
CTTACAATCCAGAACGCTTGAATGAAATTGAAATGCGCTTGAATGAAATAAGCCGATTGAAAAAGAAGTATGGCCAATCG
GTCGAAGAAATTTTAGAATATGCAGCGAGTATTGAAGATCAGATCGATCAGATTCAGAATCGAGACTCCCACATTCATCA
GTTGGAGCAGCAGATAGAGGATCTTGGAGAAGATGCAATGCTTGAAGCAAAGCAGCTTCATGACCTCCGTGTTCAAGCGG
CTGTCCAGTTAACAGACGCTATTCATGAGGAACTGAAGGATCTGTATTTGGAAAAAGCTCGTTTTCATGTTGATGTACAG
TTAAAGAATGGGAATTCTGGTGATCCAGAAATGAATGGTAAGCCTGTCCAGTTGACCGCAGACGGTTTTGACGCGATTAC
ATTCCATATCTCTACAAATCCTGGTGAGCCTTTGAAGGAACTGCACAAAGTCGCTTCAGGAGGGGAATTATCTCGTATCA
TGCTGGCGCTGAAGCGTATTTTCTCAAGACATCAAGGAGTGACAAGTGTCATTTTTGATGAAGTAGATACAGGAGTGAGT
GGCCGTGTCGCCCAGGCGATAGGAGAGAAGATATATGGTATCTCTGTTGGCTCGCAGGTATTGTGTATTACCCATTTACC
GCAGGTAGCCTCAATGGCGGATACGCATTTATTAATTGAAAAGCATGTTGAAAACAACAGTACGCATACATCTGTGACTG
AACTTGGTCAAGACACTGCTGTCGAAGAAATCAGCAGAATGATGACTGGAACAGTGCTCACTGAAAAGACTAAAGAGCAT
GCAAGAGAACTGATAACTCTTGCTGGACAATACAAACAATCATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075LK72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.861

100

0.551

Multiple sequence alignment