Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   UC78_RS00925 Genome accession   NZ_CP010906
Coordinates   187694..189199 (-) Length   501 a.a.
NCBI ID   WP_044305714.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 35925     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 182694..194199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UC78_RS00895 (UC78_0179) - 182896..184080 (-) 1185 WP_044305712.1 metallophosphoesterase -
  UC78_RS00900 (UC78_0180) - 184090..184299 (-) 210 WP_002857271.1 alkylphosphonate utilization protein -
  UC78_RS00905 (UC78_0181) - 184292..185011 (-) 720 WP_002892650.1 TerC family protein -
  UC78_RS00910 (UC78_0182) purN 185083..185649 (-) 567 WP_002866343.1 phosphoribosylglycinamide formyltransferase -
  UC78_RS00915 (UC78_0183) - 185640..187010 (-) 1371 WP_044305713.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  UC78_RS00920 (UC78_0184) - 186994..187692 (-) 699 WP_002826913.1 NYN domain-containing protein -
  UC78_RS00925 (UC78_0185) comM 187694..189199 (-) 1506 WP_044305714.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  UC78_RS00930 (UC78_0186) def 189196..189723 (-) 528 WP_002917788.1 peptide deformylase -
  UC78_RS00935 (UC78_0187) clpP 189759..190343 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  UC78_RS00940 (UC78_0188) tig 190343..191677 (-) 1335 WP_044305715.1 trigger factor -
  UC78_RS00945 (UC78_0189) folE 191820..192392 (+) 573 WP_002937171.1 GTP cyclohydrolase I FolE -
  UC78_RS00950 (UC78_0190) fliI 192392..193777 (+) 1386 WP_044305716.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56349.39 Da        Isoelectric Point: 8.7417

>NTDB_id=125362 UC78_RS00925 WP_044305714.1 187694..189199(-) (comM) [Campylobacter jejuni subsp. jejuni strain 35925]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASVAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFASPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEVLMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKTSISSKEMSEKILQAFIFGKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNISKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=125362 UC78_RS00925 WP_044305714.1 187694..189199(-) (comM) [Campylobacter jejuni subsp. jejuni strain 35925]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGACTTGCAAGTGTAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACGCTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATTACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTCTCTGCTAAAATTAAAAAAGCTAAAATTGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTGGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGTTTTTCTCATAATCATCCTTTATTCGCAAGCCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGATATCAAAGGACAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGTATGTGTGCTAAACGCCTTGTT
TATATCATGCCTCCTCAAAGTTTAAGTGAAGTTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCTA
GAATTGGAGAAGTCGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAGCCTTTAGAGGATCATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGCGGAAATTTATTTTCTAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAATACAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAACGAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTGGTAAAAAACGAGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTACTAGAAAAAGATGCCAAAGATACGTTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCGCTTAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAGCAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.295

99.601

0.471