Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HW11_RS27685 Genome accession   NZ_CP008873
Coordinates   6031725..6032360 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain F9670     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6026725..6037360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW11_RS27655 (HW11_27910) murB 6027823..6028842 (-) 1020 WP_019416379.1 UDP-N-acetylmuramate dehydrogenase -
  HW11_RS27660 (HW11_27915) - 6028839..6029303 (-) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  HW11_RS27665 (HW11_27920) kdsB 6029303..6030067 (-) 765 WP_016852666.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HW11_RS27670 (HW11_27925) - 6030067..6030252 (-) 186 WP_003091157.1 Trm112 family protein -
  HW11_RS27675 (HW11_27930) lpxK 6030290..6031288 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  HW11_RS27680 (HW11_27935) - 6031288..6031728 (-) 441 WP_003091161.1 ExbD/TolR family protein -
  HW11_RS27685 (HW11_27940) exbB 6031725..6032360 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HW11_RS27690 (HW11_27945) comA 6032433..6034658 (-) 2226 WP_016852665.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HW11_RS27695 (HW11_27950) - 6034789..6035322 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  HW11_RS27700 (HW11_27955) - 6035410..6036654 (-) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=125351 HW11_RS27685 WP_003091163.1 6031725..6032360(-) (exbB) [Pseudomonas aeruginosa strain F9670]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=125351 HW11_RS27685 WP_003091163.1 6031725..6032360(-) (exbB) [Pseudomonas aeruginosa strain F9670]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGAA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGTACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment