Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | HW11_RS11970 | Genome accession | NZ_CP008873 |
| Coordinates | 2623186..2623743 (-) | Length | 185 a.a. |
| NCBI ID | WP_003119423.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain F9670 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2618186..2628743
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HW11_RS11955 (HW11_12035) | pilY1 | 2618280..2621770 (-) | 3491 | Protein_2374 | type 4a pilus biogenesis protein PilY1 | - |
| HW11_RS11960 (HW11_12040) | pilX | 2621782..2622369 (-) | 588 | WP_003112826.1 | type 4a pilus minor pilin PilX | - |
| HW11_RS11965 (HW11_12045) | pilW | 2622366..2623189 (-) | 824 | Protein_2376 | type 4a pilus minor pilin PilW | - |
| HW11_RS11970 (HW11_12050) | pilV | 2623186..2623743 (-) | 558 | WP_003119423.1 | type 4a pilus minor pilin PilV | Machinery gene |
| HW11_RS11975 (HW11_12055) | - | 2623734..2624240 (-) | 507 | WP_003102598.1 | GspH/FimT family pseudopilin | - |
| HW11_RS11980 (HW11_12060) | - | 2624346..2624855 (-) | 510 | WP_003102595.1 | GspH/FimT family pseudopilin | - |
| HW11_RS11985 (HW11_12065) | thiO | 2624990..2626084 (+) | 1095 | WP_020750388.1 | glycine oxidase ThiO | - |
| HW11_RS11990 (HW11_12070) | pilR | 2626130..2627467 (-) | 1338 | WP_003094694.1 | two-component system response regulator PilR | Regulator |
Sequence
Protein
Download Length: 185 a.a. Molecular weight: 20061.15 Da Isoelectric Point: 8.2255
>NTDB_id=125338 HW11_RS11970 WP_003119423.1 2623186..2623743(-) (pilV) [Pseudomonas aeruginosa strain F9670]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP
Nucleotide
Download Length: 558 bp
>NTDB_id=125338 HW11_RS11970 WP_003119423.1 2623186..2623743(-) (pilV) [Pseudomonas aeruginosa strain F9670]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Pseudomonas aeruginosa PAK |
99.459 |
100 |
0.995 |