Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HV99_RS17450 Genome accession   NZ_CP008868
Coordinates   3790650..3791285 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain T63266     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3785650..3796285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV99_RS17435 (HV99_17480) - 3786356..3787600 (+) 1245 WP_017001504.1 lipoprotein-releasing ABC transporter permease subunit -
  HV99_RS17440 (HV99_17485) - 3787688..3788221 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  HV99_RS17445 (HV99_17490) comA 3788352..3790577 (+) 2226 WP_038820207.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HV99_RS17450 (HV99_17495) exbB 3790650..3791285 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HV99_RS17455 (HV99_17500) - 3791282..3791722 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  HV99_RS17460 (HV99_17505) lpxK 3791722..3792720 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  HV99_RS17465 (HV99_17510) - 3792758..3792943 (+) 186 WP_003091157.1 Trm112 family protein -
  HV99_RS17470 (HV99_17515) kdsB 3792943..3793707 (+) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HV99_RS17475 (HV99_17520) - 3793707..3794171 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  HV99_RS17480 (HV99_17525) murB 3794168..3795187 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=125181 HV99_RS17450 WP_003091163.1 3790650..3791285(+) (exbB) [Pseudomonas aeruginosa strain T63266]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=125181 HV99_RS17450 WP_003091163.1 3790650..3791285(+) (exbB) [Pseudomonas aeruginosa strain T63266]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGACGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment