Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | HW00_RS06095 | Genome accession | NZ_CP008867 |
| Coordinates | 1308012..1308536 (+) | Length | 174 a.a. |
| NCBI ID | WP_003116261.1 | Uniprot ID | Q7WZP2 |
| Organism | Pseudomonas aeruginosa strain T52373 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1306891..1325910 | 1308012..1308536 | within | 0 |
Gene organization within MGE regions
Location: 1306891..1325910
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HW00_RS06085 (HW00_06085) | - | 1306891..1307391 (+) | 501 | WP_003116259.1 | GspH/FimT family pseudopilin | - |
| HW00_RS06090 (HW00_06090) | - | 1307514..1308002 (+) | 489 | WP_003141552.1 | GspH/FimT family pseudopilin | - |
| HW00_RS06095 (HW00_06095) | pilV | 1308012..1308536 (+) | 525 | WP_003116261.1 | type IV pilus modification protein PilV | Machinery gene |
| HW00_RS06100 (HW00_06100) | - | 1308545..1309360 (+) | 816 | WP_003116262.1 | PilW family protein | - |
| HW00_RS06105 (HW00_06105) | - | 1309357..1309962 (+) | 606 | WP_003116263.1 | pilus assembly PilX family protein | - |
| HW00_RS06110 (HW00_06110) | - | 1309976..1313452 (+) | 3477 | WP_023103514.1 | pilus assembly protein | - |
| HW00_RS06115 (HW00_06115) | - | 1313455..1313781 (+) | 327 | WP_003116266.1 | PilY2 family type 4a fimbrial biogenesis protein | - |
| HW00_RS06120 (HW00_06120) | - | 1313778..1314203 (+) | 426 | WP_003116267.1 | type IV pilin protein | - |
| HW00_RS06125 (HW00_06125) | ispH | 1314272..1315216 (-) | 945 | WP_003094724.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| HW00_RS06130 (HW00_06130) | fkpB | 1315302..1315742 (-) | 441 | WP_003102613.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| HW00_RS06135 (HW00_06135) | lspA | 1315735..1316244 (-) | 510 | WP_003102615.1 | signal peptidase II | - |
| HW00_RS06140 (HW00_06140) | ileS | 1316237..1319068 (-) | 2832 | WP_003102617.1 | isoleucine--tRNA ligase | - |
| HW00_RS06145 (HW00_06145) | ribF | 1319092..1320030 (-) | 939 | WP_003102619.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| HW00_RS06150 (HW00_06150) | murJ | 1320127..1321665 (-) | 1539 | WP_003102622.1 | murein biosynthesis integral membrane protein MurJ | - |
| HW00_RS06155 (HW00_06155) | rpsT | 1321949..1322224 (+) | 276 | WP_003094744.1 | 30S ribosomal protein S20 | - |
| HW00_RS06160 (HW00_06160) | - | 1322291..1322755 (-) | 465 | WP_003094746.1 | CreA family protein | - |
| HW00_RS06165 (HW00_06165) | proB | 1322767..1323885 (-) | 1119 | WP_003094756.1 | glutamate 5-kinase | - |
| HW00_RS06170 (HW00_06170) | cgtA | 1323956..1325176 (-) | 1221 | WP_003094758.1 | Obg family GTPase CgtA | - |
| HW00_RS06175 (HW00_06175) | rpmA | 1325318..1325575 (-) | 258 | WP_003094760.1 | 50S ribosomal protein L27 | - |
| HW00_RS06180 (HW00_06180) | rplU | 1325599..1325910 (-) | 312 | WP_003094761.1 | 50S ribosomal protein L21 | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18763.51 Da Isoelectric Point: 4.9113
>NTDB_id=125126 HW00_RS06095 WP_003116261.1 1308012..1308536(+) (pilV) [Pseudomonas aeruginosa strain T52373]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL
Nucleotide
Download Length: 525 bp
>NTDB_id=125126 HW00_RS06095 WP_003116261.1 1308012..1308536(+) (pilV) [Pseudomonas aeruginosa strain T52373]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Pseudomonas aeruginosa PAK |
59.429 |
100 |
0.598 |