Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   CUGBS98_RS06240 Genome accession   NZ_CP010875
Coordinates   1227542..1227982 (-) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain CU_GBS_98     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1222542..1232982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUGBS98_RS06225 (CUGBS98_01246) - 1223200..1223826 (-) 627 WP_000449636.1 GTP pyrophosphokinase -
  CUGBS98_RS06230 (CUGBS98_01247) rcrQ 1223934..1225688 (-) 1755 WP_000851080.1 ABC transporter ATP-binding protein Regulator
  CUGBS98_RS06235 (CUGBS98_01248) rcrP 1225678..1227495 (-) 1818 WP_000481818.1 ABC transporter ATP-binding protein Regulator
  CUGBS98_RS06240 (CUGBS98_01249) rcrR 1227542..1227982 (-) 441 WP_000431168.1 MarR family transcriptional regulator Regulator
  CUGBS98_RS06245 (CUGBS98_01250) - 1228251..1230323 (+) 2073 WP_000726914.1 bifunctional metallophosphatase/5'-nucleotidase -
  CUGBS98_RS06250 (CUGBS98_01251) - 1230360..1230770 (-) 411 WP_000594936.1 peptide deformylase -
  CUGBS98_RS06255 (CUGBS98_01252) gdhA 1230840..1232189 (-) 1350 WP_017647818.1 NADP-specific glutamate dehydrogenase -
  CUGBS98_RS06260 (CUGBS98_01253) - 1232357..1232866 (+) 510 WP_000870955.1 DUF308 domain-containing protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=125066 CUGBS98_RS06240 WP_000431168.1 1227542..1227982(-) (rcrR) [Streptococcus agalactiae strain CU_GBS_98]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=125066 CUGBS98_RS06240 WP_000431168.1 1227542..1227982(-) (rcrR) [Streptococcus agalactiae strain CU_GBS_98]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATCTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411