Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CUGBS08_RS05025 Genome accession   NZ_CP010874
Coordinates   961163..961831 (+) Length   222 a.a.
NCBI ID   WP_017647712.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain CU_GBS_08     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 956163..966831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUGBS08_RS05005 (CUGBS08_01006) - 956702..957190 (-) 489 WP_001140791.1 PASTA domain-containing protein -
  CUGBS08_RS05010 (CUGBS08_01007) - 957356..958318 (+) 963 WP_001253127.1 S41 family peptidase -
  CUGBS08_RS05015 (CUGBS08_01008) - 958344..959096 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  CUGBS08_RS05020 (CUGBS08_01009) - 959098..961053 (+) 1956 WP_000499553.1 FtsX-like permease family protein -
  CUGBS08_RS05025 (CUGBS08_01010) braR 961163..961831 (+) 669 WP_017647712.1 response regulator transcription factor Regulator
  CUGBS08_RS05030 (CUGBS08_01011) - 961828..962766 (+) 939 WP_000620981.1 sensor histidine kinase -
  CUGBS08_RS05035 (CUGBS08_01012) xerS 962809..963879 (-) 1071 WP_000817930.1 tyrosine recombinase XerS Machinery gene
  CUGBS08_RS05040 (CUGBS08_01013) - 964332..965993 (+) 1662 WP_000093960.1 peptide ABC transporter substrate-binding protein -
  CUGBS08_RS05045 (CUGBS08_01014) - 966026..966799 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25416.54 Da        Isoelectric Point: 5.6814

>NTDB_id=124944 CUGBS08_RS05025 WP_017647712.1 961163..961831(+) (braR) [Streptococcus agalactiae strain CU_GBS_08]
MSQEQGKIYIVEDDMTIVSLLKDHLSASYHVSSVSNFRDVKQEIIAFQPDLILMDITLPYFNGFYWTAELRKFLTIPIIF
ISSSNDEMKMVMALNMGGDDFISKPFSLAVLDAKLTAILRRSQQFIQQELTFGGFTLTREGLLSSQDKEVILSPTENKIL
SILLMHPKQVVSKESLLEKLWENDSFIDQNTLNVNMTRLRKKIVPIGFDYIHTVRGVGYLLQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=124944 CUGBS08_RS05025 WP_017647712.1 961163..961831(+) (braR) [Streptococcus agalactiae strain CU_GBS_08]
ATGTCACAAGAGCAAGGAAAAATTTATATTGTAGAAGATGATATGACGATTGTGTCACTTTTAAAAGATCATTTATCAGC
TAGCTATCATGTCTCTAGTGTCAGCAATTTTCGTGATGTGAAACAAGAAATTATCGCATTTCAACCCGATTTGATACTAA
TGGATATTACGTTACCCTATTTTAATGGTTTTTACTGGACTGCAGAATTGCGTAAGTTTTTAACAATTCCTATTATTTTC
ATTTCATCTAGTAATGATGAAATGAAAATGGTTATGGCATTAAATATGGGGGGTGATGACTTTATTTCAAAACCATTCTC
TCTAGCTGTATTAGATGCTAAGCTAACTGCTATTTTAAGGAGAAGTCAACAATTTATCCAACAGGAATTAACTTTTGGGG
GATTTACGTTGACAAGAGAAGGGTTATTGTCTAGCCAAGATAAAGAGGTTATTTTATCGCCAACAGAAAATAAAATCCTA
TCTATCTTGCTCATGCATCCTAAACAAGTAGTCTCAAAAGAGTCTCTATTAGAGAAACTTTGGGAAAATGATAGTTTTAT
TGATCAAAATACACTTAATGTTAATATGACACGCTTACGTAAAAAAATTGTCCCAATAGGTTTTGATTACATTCATACAG
TGAGAGGAGTTGGGTATTTACTACAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-221)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.789

98.198

0.459

Multiple sequence alignment