Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   RDF_RS06700 Genome accession   NZ_CP010867
Coordinates   1320952..1321392 (-) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain SS1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1315952..1326392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDF_RS06685 (RDF_1278) - 1316610..1317236 (-) 627 WP_000449636.1 GTP pyrophosphokinase -
  RDF_RS06690 (RDF_1279) rcrQ 1317344..1319098 (-) 1755 WP_000851081.1 ABC transporter ATP-binding protein Regulator
  RDF_RS06695 (RDF_1280) rcrP 1319088..1320905 (-) 1818 WP_000481821.1 ABC transporter ATP-binding protein Regulator
  RDF_RS06700 (RDF_1281) rcrR 1320952..1321392 (-) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  RDF_RS06705 (RDF_1282) - 1321661..1323733 (+) 2073 WP_000726914.1 surface-anchored 5'-nucleotidase -
  RDF_RS06710 (RDF_1283) - 1323770..1324180 (-) 411 WP_000594936.1 peptide deformylase -
  RDF_RS06715 (RDF_1284) gdhA 1324250..1325599 (-) 1350 WP_000200448.1 NADP-specific glutamate dehydrogenase -
  RDF_RS06720 (RDF_1285) - 1325767..1326276 (+) 510 WP_000870955.1 HdeD family acid-resistance protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=124852 RDF_RS06700 WP_000431168.1 1320952..1321392(-) (rcrR) [Streptococcus agalactiae strain SS1]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=124852 RDF_RS06700 WP_000431168.1 1320952..1321392(-) (rcrR) [Streptococcus agalactiae strain SS1]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATCTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411