Detailed information NTG0124848

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RDF_RS06565
• Genome accession: NZ_CP010867
• Coordinates: 1294574..1296682 (+)
• Length: 702 a.a.
• NCBI ID: WP_000002806.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain SS1
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1289574..1301682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDF_RS06555 (RDF_1251)	rplL	1293211..1293576 (-)	366	WP_001196976.1	50S ribosomal protein L7/L12	-
RDF_RS06560 (RDF_1252)	rplJ	1293640..1294140 (-)	501	WP_001287285.1	50S ribosomal protein L10	-
RDF_RS06565 (RDF_1253)	clpC	1294574..1296682 (+)	2109	WP_000002806.1	AAA family ATPase	Regulator
RDF_RS06570 (RDF_1254)	mmuM	1296775..1297719 (-)	945	WP_000532341.1	homocysteine S-methyltransferase	-
RDF_RS06575 (RDF_1255)	-	1297724..1299100 (-)	1377	WP_000427480.1	amino acid permease	-
RDF_RS06580 (RDF_1256)	-	1299230..1299880 (-)	651	WP_000120090.1	HXXEE domain-containing protein	-
RDF_RS11410 (RDF_1257)	-	1300038..1300361 (-)	324	WP_000959713.1	HXXEE domain-containing protein	-
RDF_RS06590 (RDF_1259)	-	1300633..1301262 (+)	630	WP_000140673.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 702 a.a.
• Molecular weight: 77662.45 Da
• Isoelectric Point: 4.8427

>NTDB_id=124848 RDF_RS06565 WP_000002806.1 1294574..1296682(+) (clpC) [Streptococcus agalactiae strain SS1]
MANNNFYNRDPFGNMDDIFNSLMGNMGGYNSENKRYLINGREVTPEEFSQYRQTGKLPGQELNNQNTPTNQVSADSVLTK
LGTNLTDQARQHLLDPVIGRNKEIQETAEILARRTKNNPVLVGDAGVGKTAVIEGLAQAIINGDVPAAIKNKEIISIDIS
SLEAGTQYRGSFEENIQNIIKEVKETGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDTFNILMGIRNLYEQHHNVVLPDSVLKAAVDLSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPVTDLKSLEKEIAAQRDKQEKAVNTEDFEEALKVKTRIEELQNQIDNHTEGQKVTATINDIAMSIERLTGVPVSNM
GASDIERLKELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAFDMFGSKDAIVR
LDMSEYNDRTAVSKLIGATAGYVGYDDNSNTLTERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEAFTGDSDKDLKIMERISPYFRPEFLNRFNGVIEFSHLSKDDLSEIVDLMLDEVNQTIGKKGIDLV
VDENVKSHLIELGYDEAMGVRPLRRVIEQEIRDRITDYYLDHTDVKHLKANLQDGQIVISER

Nucleotide

• Length: 2109 bp

>NTDB_id=124848 RDF_RS06565 WP_000002806.1 1294574..1296682(+) (clpC) [Streptococcus agalactiae strain SS1]
ATGGCAAATAATAATTTTTATAATCGTGACCCTTTTGGAAATATGGATGATATTTTTAATTCTCTAATGGGAAATATGGG
GGGCTATAATAGTGAGAATAAACGATACTTAATCAATGGACGGGAAGTTACTCCTGAAGAATTCAGTCAATATCGTCAAA
CTGGAAAACTCCCCGGTCAAGAGCTAAATAACCAAAATACTCCTACAAACCAAGTCTCTGCAGATAGTGTTTTGACTAAA
TTAGGAACTAATTTAACCGATCAAGCACGTCAGCATTTGCTAGATCCAGTTATTGGACGAAACAAAGAAATTCAGGAAAC
TGCAGAAATTCTAGCTCGTCGTACTAAAAATAATCCTGTTCTAGTTGGTGATGCAGGTGTTGGTAAAACAGCTGTTATTG
AAGGTTTGGCACAAGCAATTATAAATGGTGATGTCCCTGCTGCTATCAAAAATAAAGAAATCATTTCGATAGATATCTCT
AGCCTTGAAGCTGGCACCCAATATAGGGGTAGTTTTGAAGAAAATATTCAAAATATCATAAAAGAAGTTAAGGAAACAGG
AAATATTATTCTCTTCTTTGATGAAATACACCAAATATTAGGAGCCGGTTCAACTGGTGGTGATAGTGGCTCTAAGGGGC
TCGCAGATATACTTAAGCCTGCACTTTCACGTGGTGAATTAACGGTTATAGGTGCAACTACTCAAGATGAATATCGTAAC
ACCATTCTCAAGAATGCTGCCTTAGCACGCCGCTTTAACGAAGTTAAAGTCAATGCACCTTCTGCACAAGATACTTTCAA
TATCCTTATGGGGATAAGAAACCTCTATGAGCAACATCATAATGTTGTTTTACCTGACTCTGTTTTGAAAGCAGCTGTAG
ATTTATCTATTCAATACATACCACAAAGAAGTCTCCCTGATAAAGCAATTGACCTTATTGATATGACTGCTGCACACCTA
GCTGCGCAACATCCCGTAACTGACCTTAAATCCTTAGAAAAAGAAATCGCTGCGCAAAGAGACAAGCAAGAAAAAGCTGT
CAATACTGAAGATTTTGAAGAAGCTCTTAAGGTCAAGACACGCATTGAAGAGTTACAAAACCAGATTGATAATCATACCG
AAGGACAAAAAGTCACTGCAACTATCAATGATATCGCTATGTCAATTGAGCGTCTAACTGGAGTTCCTGTATCAAATATG
GGTGCTAGTGATATTGAACGCTTAAAAGAACTTGGCAATCGTCTAAAAGGTAAAGTCATTGGTCAAAATGATGCTGTTGA
GGCAGTTGCAAGAGCTATTCGCCGAAATCGTGCTGGTTTCGATGATGGTAATCGTCCGATTGGTAGCTTTCTATTTGTTG
GACCAACTGGAGTTGGTAAAACTGAGCTAGCAAAGCAATTAGCTTTTGATATGTTCGGATCAAAGGATGCTATCGTTAGA
CTTGATATGTCTGAATATAATGATCGTACAGCAGTTTCTAAGCTAATTGGAGCGACTGCTGGTTACGTTGGTTATGACGA
CAATAGTAATACACTAACAGAACGTATCCGTCGAAATCCTTATTCTATTGTTCTTCTTGATGAAATCGAAAAAGCTGACC
CGCAAGTTATCACGCTTCTCCTTCAAGTTCTAGATGATGGCCGTTTAACTGATGGTCAAGGAAACACTATTAACTTTAAA
AATACTGTTATCATTGCAACCTCAAATGCAGGTTTTGGAAACGAAGCATTTACAGGTGACAGCGATAAAGACTTGAAAAT
TATGGAACGAATTTCTCCATATTTCCGTCCAGAATTTCTAAATCGTTTCAATGGTGTTATTGAATTCTCTCACCTAAGCA
AAGATGACTTAAGCGAAATTGTAGATTTGATGCTTGATGAAGTTAACCAAACAATTGGCAAAAAAGGAATTGACCTTGTG
GTAGATGAAAATGTTAAATCACACTTAATTGAACTGGGTTATGACGAAGCAATGGGAGTACGTCCATTGCGCCGTGTCAT
CGAGCAAGAAATTCGAGATCGCATCACAGACTACTATCTCGATCATACAGACGTTAAACACCTAAAAGCTAATTTGCAAG
ATGGCCAAATCGTCATTTCTGAAAGATAA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (261-358)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (612-683)

• ATPase family associated with various cellular activities (AAA) (AAA) (120-252)

• AAA domain (Cdc48 subfamily) (AAA_2) (445-604)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.346	99.288	0.47
clpE	Streptococcus pneumoniae Rx1	48.826	91.026	0.444
clpE	Streptococcus pneumoniae D39	48.826	91.026	0.444
clpE	Streptococcus pneumoniae R6	48.826	91.026	0.444
clpE	Streptococcus pneumoniae TIGR4	48.826	91.026	0.444
clpE	Streptococcus mutans UA159	49.209	90.028	0.443
clpC	Bacillus subtilis subsp. subtilis str. 168	44.179	95.442	0.422
clpC	Streptococcus pneumoniae TIGR4	42.994	89.459	0.385
clpC	Streptococcus pneumoniae Rx1	43.514	86.752	0.377
clpC	Streptococcus pneumoniae D39	43.514	86.752	0.377
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.864	90.171	0.377
clpC	Streptococcus thermophilus LMD-9	42.857	86.752	0.372
clpC	Streptococcus thermophilus LMG 18311	42.693	86.752	0.37
clpC	Streptococcus mutans UA159	40.566	90.598	0.368