Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   RDF_RS06270 Genome accession   NZ_CP010867
Coordinates   1229369..1229851 (-) Length   160 a.a.
NCBI ID   WP_000163512.1    Uniprot ID   Q8DZB3
Organism   Streptococcus agalactiae strain SS1     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1224369..1234851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDF_RS06250 (RDF_1189) alsS 1224628..1226310 (-) 1683 WP_000140344.1 acetolactate synthase AlsS -
  RDF_RS06255 (RDF_1190) - 1226420..1227646 (-) 1227 WP_000934868.1 tetratricopeptide repeat protein -
  RDF_RS06260 (RDF_1191) - 1227636..1228826 (-) 1191 WP_001081534.1 AI-2E family transporter -
  RDF_RS06265 (RDF_1192) - 1228918..1229379 (-) 462 WP_000796053.1 NUDIX hydrolase -
  RDF_RS06270 (RDF_1193) mutX 1229369..1229851 (-) 483 WP_000163512.1 NUDIX hydrolase Machinery gene
  RDF_RS06275 (RDF_1194) hylB 1230069..1233287 (+) 3219 WP_000403414.1 hyaluronate lyase -
  RDF_RS06280 (RDF_1195) rfbB 1233339..1234385 (-) 1047 WP_000134275.1 dTDP-glucose 4,6-dehydratase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18837.23 Da        Isoelectric Point: 4.5116

>NTDB_id=124845 RDF_RS06270 WP_000163512.1 1229369..1229851(-) (mutX) [Streptococcus agalactiae strain SS1]
MTKLATICYIDNGKELLLLHRNKKENDVHEGKWISVGGKLEAGETPDECAKREILEETHLTVKKMDFKGVITFPEFTPGH
DWYTYVFKVTDYEGELISDDESREGTLEWVPYDQVLSKPTWQGDYEIFKWILEDVPFFSAKFVYDEHQNLIEKTVNFYEK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=124845 RDF_RS06270 WP_000163512.1 1229369..1229851(-) (mutX) [Streptococcus agalactiae strain SS1]
ATGACTAAATTAGCAACAATTTGTTACATTGACAATGGCAAGGAATTACTTCTATTGCACCGCAACAAAAAAGAGAATGA
TGTTCATGAGGGAAAGTGGATCTCGGTAGGCGGTAAACTGGAGGCAGGTGAAACTCCTGATGAATGTGCTAAGCGTGAAA
TTCTAGAAGAAACCCATTTAACAGTAAAAAAAATGGATTTTAAAGGAGTCATCACTTTTCCTGAATTTACGCCAGGTCAT
GATTGGTATACCTATGTCTTTAAAGTAACAGATTATGAAGGAGAGTTAATTTCAGATGATGAATCACGAGAAGGAACTTT
AGAATGGGTACCATATGATCAAGTTCTCTCTAAGCCAACGTGGCAAGGAGATTACGAAATTTTTAAATGGATTTTAGAAG
ATGTTCCTTTCTTTTCTGCTAAGTTTGTTTATGATGAACACCAAAATTTAATTGAAAAGACGGTTAATTTTTATGAAAAA
TAG

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DZB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.698

99.375

0.712

Multiple sequence alignment