Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RDF_RS05315 Genome accession   NZ_CP010867
Coordinates   1042501..1043463 (-) Length   320 a.a.
NCBI ID   WP_000735588.1    Uniprot ID   Q8DZT7
Organism   Streptococcus agalactiae strain SS1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1037501..1048463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDF_RS05295 (RDF_1000) dprA 1038702..1039544 (-) 843 WP_001015250.1 DNA-processing protein DprA Machinery gene
  RDF_RS05300 (RDF_1001) - 1039682..1040710 (-) 1029 WP_000162771.1 siderophore ABC transporter substrate-binding protein -
  RDF_RS05305 (RDF_1002) - 1040772..1041533 (-) 762 WP_000614752.1 ABC transporter ATP-binding protein -
  RDF_RS05310 (RDF_1003) - 1041530..1042504 (-) 975 WP_000588576.1 iron chelate uptake ABC transporter family permease subunit -
  RDF_RS05315 (RDF_1004) ceuB 1042501..1043463 (-) 963 WP_000735588.1 ABC transporter permease Machinery gene
  RDF_RS05320 (RDF_1005) - 1043701..1044249 (-) 549 WP_000136506.1 sugar O-acetyltransferase -
  RDF_RS05325 (RDF_1006) - 1044270..1045031 (-) 762 WP_000201088.1 ribonuclease HII -
  RDF_RS05330 (RDF_1007) ylqF 1045018..1045869 (-) 852 WP_000201281.1 ribosome biogenesis GTPase YlqF -
  RDF_RS05335 (RDF_1008) - 1046145..1046717 (-) 573 WP_001231800.1 L,D-transpeptidase -
  RDF_RS05340 (RDF_1009) - 1046918..1048402 (-) 1485 WP_000256021.1 carbon starvation protein A -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34880.98 Da        Isoelectric Point: 8.4842

>NTDB_id=124841 RDF_RS05315 WP_000735588.1 1042501..1043463(-) (ceuB) [Streptococcus agalactiae strain SS1]
MKKLLTTPVMGCTLVILSLTSLFVGVKSIPLEQITHLDQSQVDIFLTSRLPRTISILISGASLSVCGLLMQQLTQNKFVS
PTTSGTMDWAKLGVVVTLIFFKNTSIFIQLCIASGFAILGSLLFVTILKMITFKDNIFIPLIGLMLGQIVAAATVFLGTH
FQVLQSVNSWLQGNFSIMTSHRYEILYLALPCLFLVYFFAHQFTIVGLGESFAKNLGVAYEKMIYFGLVLVSIMTSLVII
IVGALPFLGLIVPNLISITKGDHMSSTILETSLLGACIVMICDLFGRLVIFPYEVSIGVTLGVLGSAFFLISIIRNEGKS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=124841 RDF_RS05315 WP_000735588.1 1042501..1043463(-) (ceuB) [Streptococcus agalactiae strain SS1]
ATGAAAAAGCTATTAACCACTCCTGTAATGGGTTGTACTTTGGTTATACTTTCTCTAACGTCCCTATTTGTTGGTGTGAA
ATCTATCCCACTGGAGCAAATAACACACCTTGATCAATCACAGGTAGATATTTTTTTAACGAGTCGCTTACCAAGAACCA
TTAGTATCCTAATATCTGGTGCAAGTTTGTCAGTCTGTGGCCTGCTGATGCAACAACTAACCCAAAACAAGTTCGTTTCA
CCGACAACTTCAGGGACTATGGATTGGGCGAAATTAGGAGTAGTTGTTACGCTGATTTTCTTTAAAAATACCTCTATTTT
TATTCAACTATGTATAGCTTCAGGTTTTGCCATTTTAGGATCGCTTCTTTTTGTAACCATTTTAAAAATGATTACTTTTA
AGGATAATATTTTTATACCTCTTATCGGACTGATGCTTGGACAAATTGTAGCAGCAGCAACAGTATTTTTAGGAACACAT
TTTCAAGTACTACAATCTGTCAACAGTTGGCTTCAAGGTAATTTTTCCATCATGACTAGCCATCGCTACGAAATTCTTTA
CTTAGCATTGCCATGTTTGTTTTTAGTATATTTTTTTGCTCATCAGTTTACCATTGTTGGGCTTGGAGAAAGCTTCGCTA
AGAATTTAGGGGTTGCTTATGAAAAGATGATTTACTTTGGTTTAGTTTTGGTTTCAATTATGACATCCCTAGTCATTATT
ATCGTAGGAGCTTTACCTTTCTTAGGTTTAATCGTACCTAATCTAATTAGCATAACTAAAGGAGATCATATGTCCTCAAC
TATCTTAGAGACATCGCTTTTAGGGGCTTGTATCGTCATGATATGTGATCTTTTTGGTCGCTTAGTTATTTTTCCTTATG
AAGTCTCAATAGGAGTTACGCTAGGAGTATTAGGTAGTGCCTTTTTCCTGATTTCAATTATAAGAAATGAGGGAAAATCA
TGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DZT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.649

99.688

0.475

Multiple sequence alignment