Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGH   Type   Machinery gene
Locus tag   RDF_RS01120 Genome accession   NZ_CP010867
Coordinates   190850..191824 (+) Length   324 a.a.
NCBI ID   WP_001008574.1    Uniprot ID   Q8E232
Organism   Streptococcus agalactiae strain SS1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 185850..196824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDF_RS01080 (RDF_0164) - 186540..186905 (+) 366 WP_000285373.1 DUF1033 family protein -
  RDF_RS01085 (RDF_0165) comGA 187078..188049 (+) 972 WP_000250805.1 competence type IV pilus ATPase ComGA Machinery gene
  RDF_RS01090 (RDF_0166) comGB 187943..188986 (+) 1044 WP_223295889.1 competence type IV pilus assembly protein ComGB Machinery gene
  RDF_RS01095 (RDF_0167) comGC/cglC 188983..189312 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  RDF_RS01100 (RDF_0168) comGD 189287..189700 (+) 414 WP_000244261.1 competence type IV pilus minor pilin ComGD Machinery gene
  RDF_RS01105 (RDF_0169) comGE 189672..189971 (+) 300 WP_000234804.1 competence type IV pilus minor pilin ComGE Machinery gene
  RDF_RS01110 (RDF_0170) comGF 189925..190386 (+) 462 WP_001878820.1 competence type IV pilus minor pilin ComGF Machinery gene
  RDF_RS01115 (RDF_0171) comGG 190364..190735 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG Machinery gene
  RDF_RS01120 (RDF_0172) comGH 190850..191824 (+) 975 WP_001008574.1 class I SAM-dependent methyltransferase Machinery gene
  RDF_RS01125 (RDF_0173) - 191856..193049 (+) 1194 WP_000047534.1 acetate kinase -
  RDF_RS01130 (RDF_0174) - 193201..193407 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  RDF_RS11260 (RDF_0175) - 193466..193603 (+) 138 WP_001865900.1 hypothetical protein -
  RDF_RS01135 (RDF_0176) - 193644..194099 (+) 456 WP_000905673.1 hypothetical protein -
  RDF_RS01140 (RDF_0177) - 194168..194833 (+) 666 WP_000008113.1 CPBP family intramembrane glutamic endopeptidase -
  RDF_RS01145 (RDF_0178) proC 194854..195624 (-) 771 WP_001865901.1 pyrroline-5-carboxylate reductase -
  RDF_RS01150 (RDF_0179) pepA 195694..196761 (-) 1068 WP_001281323.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37046.02 Da        Isoelectric Point: 4.5224

>NTDB_id=124798 RDF_RS01120 WP_001008574.1 190850..191824(+) (comGH) [Streptococcus agalactiae strain SS1]
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDMVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGSS
AQFIQEDAVRPQILKESDVIISDLPVGYYPNDGIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWSRENSHYSK
NMIK

Nucleotide


Download         Length: 975 bp        

>NTDB_id=124798 RDF_RS01120 WP_001008574.1 190850..191824(+) (comGH) [Streptococcus agalactiae strain SS1]
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAACCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATGGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTGGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTCTAGT
GCCCAATTTATCCAAGAGGATGCTGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGGTATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGCAGAGAAAATAGTCATTACTCAAAA
AATATGATAAAATAG

Domains

Predicted by InterProScan.

N-6 DNA Methylase (N6_Mtase)

(70-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8E232

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGH Streptococcus mutans UA159

67.302

97.222

0.654
  comGH Streptococcus mutans UA140

67.302

97.222

0.654