Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RDF_RS00265 Genome accession   NZ_CP010867
Coordinates   32611..33372 (+) Length   253 a.a.
NCBI ID   WP_001266269.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27611..38372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDF_RS00250 (RDF_0017) - 28903..30246 (+) 1344 WP_000746079.1 CHAP domain-containing protein -
  RDF_RS00255 (RDF_0018) - 30370..31338 (+) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  RDF_RS00260 (RDF_0019) - 31446..32621 (+) 1176 WP_000171457.1 pyridoxal phosphate-dependent aminotransferase -
  RDF_RS00265 (RDF_0020) recO 32611..33372 (+) 762 WP_001266269.1 DNA repair protein RecO Machinery gene
  RDF_RS00270 (RDF_0021) - 33435..34313 (+) 879 WP_000420133.1 CPBP family intramembrane glutamic endopeptidase -
  RDF_RS00275 (RDF_0022) plsX 34391..35383 (+) 993 WP_000717407.1 phosphate acyltransferase PlsX -
  RDF_RS00280 - 35394..35632 (+) 239 Protein_21 phosphopantetheine-binding protein -
  RDF_RS00285 (RDF_0025) purC 35756..36460 (+) 705 WP_001064659.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29668.10 Da        Isoelectric Point: 6.2989

>NTDB_id=124780 RDF_RS00265 WP_001266269.1 32611..33372(+) (recO) [Streptococcus agalactiae strain SS1]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
INSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=124780 RDF_RS00265 WP_001266269.1 32611..33372(+) (recO) [Streptococcus agalactiae strain SS1]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGAAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ATTAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTATACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.113

98.024

0.628

Multiple sequence alignment