Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   TK78_RS30205 Genome accession   NZ_CP010833
Coordinates   6827764..6829131 (+) Length   455 a.a.
NCBI ID   WP_006123203.1    Uniprot ID   A0A5D4JIE7
Organism   Streptomyces sp. Tue 6075 strain Tue6075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6822764..6834131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TK78_RS30180 (TK78_29650) vraR 6823420..6824040 (-) 621 WP_075267302.1 response regulator transcription factor Regulator
  TK78_RS30185 (TK78_29655) - 6824040..6825302 (-) 1263 WP_075267303.1 sensor histidine kinase -
  TK78_RS30190 (TK78_29660) - 6825260..6826081 (-) 822 WP_075267304.1 ABC transporter permease -
  TK78_RS30195 (TK78_29665) - 6826078..6826935 (-) 858 WP_107472836.1 ABC transporter ATP-binding protein -
  TK78_RS30200 (TK78_29670) - 6827072..6827710 (+) 639 WP_006123204.1 vitamin K epoxide reductase family protein -
  TK78_RS30205 (TK78_29675) rarA 6827764..6829131 (+) 1368 WP_006123203.1 replication-associated recombination protein A Machinery gene
  TK78_RS30210 (TK78_29680) - 6829153..6829854 (-) 702 WP_075267306.1 DUF2470 domain-containing protein -
  TK78_RS30215 (TK78_29685) rpsD 6830046..6830660 (+) 615 WP_006123201.1 30S ribosomal protein S4 -
  TK78_RS30220 (TK78_29690) - 6830678..6832891 (-) 2214 WP_075267307.1 AAA family ATPase -
  TK78_RS30225 (TK78_29695) - 6833112..6833567 (+) 456 WP_075267308.1 DUF948 domain-containing protein -
  TK78_RS30230 (TK78_29700) - 6833575..6833922 (+) 348 WP_075267309.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48464.76 Da        Isoelectric Point: 5.9906

>NTDB_id=124769 TK78_RS30205 WP_006123203.1 6827764..6829131(+) (rarA) [Streptomyces sp. Tue 6075 strain Tue6075]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGDGGGPAGASSVILWGPPGTGKTTLAYV
VSKATNKRFVELSAITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
IISPLLSRSLLLTLEPLTDDDLRSLLRRALTEERGLGGAVTLPEDAEAHLLRIAGGDARRALTALEAAAGAAIATHEAEI
TLETVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTALP
TAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAAQDDVRRGLAGPVPAHLRDGHYKGAAKLGHAQGYVYP
HDVQGGIAAQQYAPDAVRDRQYYTPTRYGAEARYADVVERVRERLGRAGEGGEQE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=124769 TK78_RS30205 WP_006123203.1 6827764..6829131(+) (rarA) [Streptomyces sp. Tue 6075 strain Tue6075]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGTCCGGAT
GCGTCCGCGCACTCTCGACGAGGTCGTCGGCCAGCAACATCTGCTGAAGCCGGGCTCGCCCCTGCGCCGTCTCGTCGGCG
ACGGGGGCGGCCCGGCGGGGGCGTCGTCCGTCATCCTGTGGGGCCCGCCCGGCACCGGCAAGACGACCCTGGCGTACGTG
GTCAGCAAGGCCACCAACAAGCGCTTCGTGGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGGGCCGTCATCGA
GAGCGCGCGTCGCGCCACCGGTGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGGCAC
AGCAGGACTCCCTGCTGCCCGCCGTCGAGAACCGCTGGGTGACGCTCATCGCCGCCACCACGGAGAATCCGTACTTCTCG
ATCATCTCCCCGCTGCTCTCGCGCTCCCTGCTGCTCACCCTGGAGCCGCTGACCGACGACGACCTGCGCTCCCTGCTGCG
CCGGGCGCTCACCGAGGAGCGGGGGCTCGGCGGGGCGGTCACCCTGCCCGAGGACGCCGAGGCCCATCTGCTGCGGATCG
CCGGCGGCGACGCGCGCCGGGCGCTCACCGCGCTGGAGGCCGCCGCCGGTGCCGCCATCGCCACGCACGAGGCGGAGATC
ACGCTGGAGACGGTCGAGGCGACCGTCGACCGGGCCGCCGTGAAGTACGACCGAGACGGCGACCAGCACTACGACGTGGC
CAGCGCGCTCATCAAGTCGATCCGCGGCTCCGACGTGGACGCCGCACTGCACTATCTGGCCCGGATGATCGAGGCGGGGG
AGGACCCCCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGCGAGGACATCGGGCTCGCGGATCCCACCGCGCTGCCG
ACGGCGGTGGCGGCAGCCCAGGCGGTCGCCATGATCGGTTTCCCGGAGGCGGCGCTCACCCTCAGCCACGCCACCATCGC
GCTGGCGCTCGCCCCCAAGTCCAACGCGGCGACGCTCGCGATCTCCGCCGCCCAGGACGATGTGCGCAGAGGGCTGGCCG
GACCCGTCCCGGCCCATCTGCGCGACGGCCACTACAAGGGCGCGGCCAAGCTCGGCCACGCCCAGGGCTATGTCTATCCG
CACGATGTGCAGGGCGGCATCGCCGCCCAGCAGTACGCCCCGGACGCCGTCCGCGACCGGCAGTACTACACACCCACCCG
CTACGGCGCCGAGGCGCGGTACGCGGACGTCGTCGAGCGCGTCCGCGAGCGCCTCGGCCGCGCCGGCGAGGGCGGCGAGC
AGGAGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-275)

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4JIE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.548

94.725

0.422