Detailed information NTG0124735

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: TK78_RS16045
• Genome accession: NZ_CP010833
• Coordinates: 3681126..3683717 (-)
• Length: 863 a.a.
• NCBI ID: WP_075265137.1
• Uniprot ID: -
• Organism: Streptomyces sp. Tue 6075 strain Tue6075
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3676126..3688717

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TK78_RS16015 (TK78_15715)	-	3676761..3677282 (-)	522	WP_075265132.1	DUF2617 family protein	-
TK78_RS16020 (TK78_15720)	-	3677604..3677906 (-)	303	WP_075265133.1	hypothetical protein	-
TK78_RS16025 (TK78_15725)	-	3678046..3679209 (+)	1164	WP_075265134.1	pyridoxal phosphate-dependent aminotransferase	-
TK78_RS35710 (TK78_15730)	-	3679306..3679533 (-)	228	WP_159027426.1	hypothetical protein	-
TK78_RS16040 (TK78_15735)	-	3680422..3680967 (-)	546	WP_075265136.1	YbjN domain-containing protein	-
TK78_RS16045 (TK78_15740)	clpC	3681126..3683717 (-)	2592	WP_075265137.1	ATP-dependent chaperone ClpB	Regulator
TK78_RS16050 (TK78_15745)	-	3683866..3684267 (+)	402	WP_075265138.1	TIGR03618 family F420-dependent PPOX class oxidoreductase	-
TK78_RS16055 (TK78_15750)	-	3684399..3684719 (-)	321	WP_003967571.1	hypothetical protein	-
TK78_RS16065 (TK78_15755)	-	3685021..3686031 (+)	1011	WP_175465414.1	helix-turn-helix transcriptional regulator	-
TK78_RS16070 (TK78_15760)	-	3686232..3687245 (+)	1014	WP_075265141.1	helix-turn-helix transcriptional regulator	-
TK78_RS16075 (TK78_15765)	-	3687292..3687831 (+)	540	WP_075265142.1	hypothetical protein	-
TK78_RS16080 (TK78_15770)	-	3687956..3688408 (-)	453	WP_032767066.1	helix-turn-helix domain-containing protein	-

Sequence

Protein

• Length: 863 a.a.
• Molecular weight: 94268.86 Da
• Isoelectric Point: 4.7473

>NTDB_id=124735 TK78_RS16045 WP_075265137.1 3681126..3683717(-) (clpC) [Streptomyces sp. Tue 6075 strain Tue6075]
MDAELTNKSRDAINAATNRAVKDGHPDLTPGHLLLALLEGQDNENIVDLLAAVEADLALVRGETERLLGGLPGVTGSTVA
PPQPNRELLAVVQDAAQRAKELGDEYISTEHLLIGIAAKGGRAGEILDGQGAGAKKLLAAFETSRGGRRVTTPDPEGQYK
ALEKFGTDFTAAAREGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKDKRLVS
LDLGAMVAGAKYRGEFEERLKTVLSEIKESDGRIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPSVEDTIAILRGLKGRYEAHHKVQIADSALVAAATLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPLEIDELQRSVDRLRMEELALKNESDAASKERLAKLRRDLADKEEELRGLNARWEKEKQGLNRVGELKER
LDELRGQAERAQRDGDFDAASKLLYGEIPGLERELEEAAEAEQEASKDKDTMVKEEVGPDDIADVVGAWTGIPAGRLLEG
ETQKLLRMESELGKRLIGQTEAVQAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMIRIDM
SEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTIL
ILTSNLGSQFLMDPLVKPEVKKQQVLDVVRASFKPEFINRLDDLVVFSALSGDELAHIAGLQIDRLAKRLADRRLTLDVT
PEALAWLAQEGNDPAYGARPLRRLIQTAIGDRLAKEILSGEVRDGDTVRVDRAEDGLIVGPAS

Nucleotide

• Length: 2592 bp

>NTDB_id=124735 TK78_RS16045 WP_075265137.1 3681126..3683717(-) (clpC) [Streptomyces sp. Tue 6075 strain Tue6075]
GTGGACGCCGAGCTGACCAACAAGAGCCGCGACGCCATCAACGCGGCCACCAACCGGGCCGTGAAGGACGGGCACCCGGA
CCTGACCCCGGGACACCTGCTGCTCGCGCTGCTGGAGGGGCAGGACAACGAGAACATCGTCGATCTGCTCGCCGCCGTCG
AGGCCGACCTGGCGCTGGTGCGCGGCGAGACCGAGCGGCTGCTCGGCGGGCTGCCCGGCGTCACCGGGTCCACCGTCGCC
CCGCCGCAGCCCAACCGTGAGCTGCTCGCCGTCGTCCAGGACGCGGCCCAGCGGGCCAAGGAGCTGGGCGACGAGTACAT
CTCCACCGAGCACCTGCTCATCGGTATCGCCGCGAAGGGCGGCCGGGCCGGTGAGATCCTCGACGGACAAGGGGCCGGCG
CCAAGAAGCTGCTGGCCGCGTTCGAGACGAGCAGGGGAGGGCGCCGGGTGACCACACCCGACCCGGAGGGCCAGTACAAG
GCCCTGGAGAAGTTCGGCACCGACTTCACGGCCGCCGCGCGCGAGGGCAAGCTGGATCCGGTCATCGGCCGCGACCAGGA
GATCCGCCGCGTCGTGCAGGTGCTGTCGCGCCGGACGAAGAACAACCCCGTGCTCATCGGTGAGCCCGGCGTCGGCAAGA
CCGCCGTCGTCGAAGGGCTCGCCCAGCGCATCGTCAAGGGCGACGTCCCGGAGAGCCTCAAGGACAAGCGGCTCGTCTCG
CTGGACCTCGGCGCGATGGTCGCGGGCGCGAAGTACCGCGGTGAGTTCGAGGAGCGGTTGAAGACCGTCCTCTCCGAGAT
CAAGGAGAGCGACGGGCGGATCATCACGTTCATCGACGAGCTGCACACCGTCGTCGGCGCCGGCGCGGGCGGCGACTCCG
CCATGGACGCGGGCAACATGCTCAAGCCCATGCTGGCCCGCGGTGAGCTGCGCATGGTCGGCGCGACCACGCTCGACGAG
TACCGCGAGCGCATCGAGAAGGATCCCGCCCTGGAGCGCCGCTTCCAGCAGGTGCTGGTCGCCGAGCCGTCCGTCGAGGA
CACCATCGCGATCCTGCGCGGCCTCAAGGGCCGTTATGAGGCCCACCACAAGGTGCAGATCGCGGACTCGGCGCTGGTGG
CCGCCGCGACCCTCTCCGACCGCTACATCACCTCCCGCTTCCTCCCCGACAAGGCCATCGACCTGGTCGACGAGGCCGCG
TCCCGGCTGCGGATGGAGATCGACTCCTCACCCCTGGAGATCGACGAACTCCAGCGCTCCGTGGACCGGTTGCGCATGGA
GGAGCTGGCCCTCAAGAACGAGTCCGACGCCGCCTCCAAGGAGCGCCTGGCGAAGCTGCGCCGCGACCTCGCCGACAAGG
AGGAGGAGCTGCGCGGCCTCAACGCCCGCTGGGAGAAGGAGAAGCAGGGCCTCAACCGGGTCGGTGAGCTCAAGGAGCGC
CTCGACGAGCTGCGCGGCCAGGCCGAACGCGCCCAGCGCGACGGCGACTTCGACGCCGCCTCCAAGCTGCTGTACGGGGA
GATCCCGGGGCTGGAGAGGGAGTTGGAGGAGGCCGCGGAAGCGGAGCAGGAGGCGTCCAAGGACAAGGACACCATGGTCA
AGGAGGAAGTCGGTCCTGACGACATCGCGGACGTCGTCGGCGCCTGGACCGGCATCCCGGCCGGGCGGCTGCTGGAGGGC
GAGACGCAGAAGCTGCTGCGGATGGAGAGCGAACTCGGCAAGCGGCTGATCGGGCAGACCGAGGCCGTGCAGGCCGTCTC
CGACGCCGTACGCCGGACCAGGGCGGGCATCGCCGATCCCGACCGGCCCACCGGGTCGTTCCTCTTCCTGGGCCCGACCG
GTGTCGGCAAGACCGAGTTGGCCAAGGCGCTCGCGGACTTCCTGTTCGACGACGAGCGGGCCATGATCCGCATCGACATG
AGCGAGTACGGCGAGAAGCACAGCGTCGCCCGCCTGGTCGGGGCCCCGCCCGGTTACGTCGGCTACGAGGAGGGCGGCCA
GCTCACCGAGGCCGTCCGCCGCCGCCCGTACAGCGTCGTGCTCCTGGACGAGGTGGAGAAGGCCCATCCCGAGGTCTTCG
ACATCCTGCTCCAGGTCCTCGACGACGGCCGGCTCACCGACGGCCAGGGCCGCACGGTCGACTTCCGCAACACCATCCTG
ATCCTCACCTCCAACCTCGGCTCCCAGTTCCTGATGGACCCCCTGGTCAAGCCCGAGGTGAAGAAGCAGCAGGTGCTGGA
CGTGGTGCGGGCCTCCTTCAAGCCGGAGTTCATCAACCGGCTCGACGACCTCGTGGTCTTCTCCGCCCTGTCCGGCGACG
AGCTCGCGCACATCGCCGGGCTCCAGATCGACCGGCTGGCGAAGCGCCTCGCGGACCGGCGGCTCACCCTGGACGTCACC
CCCGAGGCGCTGGCCTGGCTCGCCCAGGAGGGCAACGACCCGGCCTACGGGGCGCGCCCGCTGCGCCGGCTCATCCAGAC
CGCGATCGGTGACCGGCTCGCCAAGGAGATCCTGTCCGGCGAGGTCCGCGACGGTGACACCGTACGGGTGGACCGGGCCG
AGGACGGACTGATCGTCGGCCCCGCTTCGTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (204-338)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (770-850)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-69)

• AAA lid domain (AAA_lid_9) (344-446)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-763)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	44.343	100	0.45
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	45.915	82.271	0.378