Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   TK78_RS02985 Genome accession   NZ_CP010833
Coordinates   714432..715454 (+) Length   340 a.a.
NCBI ID   WP_075263204.1    Uniprot ID   -
Organism   Streptomyces sp. Tue 6075 strain Tue6075     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 709432..720454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TK78_RS02965 (TK78_02880) - 710828..711337 (+) 510 WP_079181407.1 N-acetyltransferase -
  TK78_RS02970 (TK78_02885) - 711430..712260 (-) 831 WP_010072805.1 ABC transporter ATP-binding protein -
  TK78_RS02975 (TK78_02890) - 712257..713276 (-) 1020 WP_075263203.1 ABC transporter substrate-binding protein -
  TK78_RS02980 (TK78_02895) - 713313..714176 (-) 864 WP_006128969.1 ABC transporter permease -
  TK78_RS02985 (TK78_02900) cytR 714432..715454 (+) 1023 WP_075263204.1 LacI family DNA-binding transcriptional regulator Regulator
  TK78_RS02990 (TK78_02905) - 715504..716088 (-) 585 WP_010072804.1 GAF domain-containing protein -
  TK78_RS02995 (TK78_02910) - 716085..716708 (-) 624 WP_010057974.1 ATP/GTP-binding protein -
  TK78_RS03000 (TK78_02915) - 716686..717057 (-) 372 WP_006128964.1 DUF742 domain-containing protein -
  TK78_RS03005 (TK78_02920) - 717060..717494 (-) 435 WP_006128963.1 roadblock/LC7 domain-containing protein -
  TK78_RS03010 (TK78_02925) - 717500..719677 (-) 2178 WP_075263205.1 ATP-binding protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 35580.82 Da        Isoelectric Point: 10.0618

>NTDB_id=124699 TK78_RS02985 WP_075263204.1 714432..715454(+) (cytR) [Streptomyces sp. Tue 6075 strain Tue6075]
MTLDAVAREAGVSLATASRALNGTARVRDDLRGRVRAAADLLGYIPNAHAQALASAEGNRTVGLICHDVGDPYFAGIASG
VMRAAAEQDLLVMLASTFREPAREIAYVSMLRAQRARAILLIGSGFQDRAWERAMDAELEPYVRAGGRVAVVSRHRSMRV
DTVQPENRAGAAALAASLVALGHRDFAVLSGPPELTTVADRLAGFREGLAAAGITLRRVVRGAFTREGGHAAARQLLAAG
DARPTCVFAVTDVMAVGALAALREAGVRVPEDMSLAGFDDIPVVREVSPPLTTVALPLTEMGEQVIALALRTPSRAGRSR
VVRIEGSVVLRGSTGAPPGS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=124699 TK78_RS02985 WP_075263204.1 714432..715454(+) (cytR) [Streptomyces sp. Tue 6075 strain Tue6075]
GTGACGCTCGACGCGGTGGCACGCGAGGCCGGCGTCTCGCTCGCCACCGCGTCCCGGGCCCTCAACGGCACGGCCAGGGT
CCGCGACGACCTGCGCGGCCGGGTGCGCGCGGCGGCCGATCTCCTCGGCTACATCCCCAACGCCCATGCCCAGGCCCTCG
CCAGCGCCGAGGGCAACCGTACGGTGGGGCTGATCTGCCACGACGTGGGCGACCCGTACTTCGCGGGCATCGCGAGCGGG
GTGATGCGCGCGGCGGCCGAACAGGACCTGCTGGTGATGCTGGCCTCCACCTTCCGGGAACCGGCACGGGAGATCGCGTA
CGTCTCGATGCTGCGGGCTCAGCGGGCGCGGGCCATCCTGCTGATCGGCTCCGGCTTCCAGGACCGGGCCTGGGAGCGGG
CGATGGACGCCGAGCTGGAGCCGTACGTCCGGGCGGGCGGCCGGGTCGCGGTGGTCAGCCGGCACCGGTCCATGCGGGTG
GACACCGTCCAGCCGGAGAACCGGGCCGGGGCGGCGGCGCTCGCGGCCTCGCTGGTGGCGCTGGGGCACCGGGACTTCGC
GGTGCTCAGCGGTCCGCCCGAACTGACCACGGTGGCAGACCGGTTGGCGGGTTTCCGTGAGGGGCTCGCCGCCGCGGGCA
TCACCCTTCGGCGGGTGGTGCGGGGCGCGTTCACCCGGGAGGGCGGGCACGCGGCGGCGCGTCAGCTGCTGGCCGCCGGG
GACGCCCGGCCGACCTGCGTGTTCGCGGTGACCGATGTGATGGCGGTCGGCGCGCTGGCCGCGCTGCGGGAGGCCGGTGT
GCGCGTCCCCGAGGACATGTCGCTGGCGGGGTTCGACGACATCCCCGTCGTACGGGAGGTGTCGCCGCCGCTGACCACGG
TGGCGCTGCCGCTCACGGAGATGGGCGAGCAGGTGATCGCCCTCGCTCTGCGGACGCCGTCGCGGGCGGGGCGTTCCCGG
GTGGTGCGGATCGAGGGAAGCGTGGTCCTGCGGGGCAGTACCGGTGCGCCGCCCGGGAGTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(2-47)

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.447

100

0.362

Multiple sequence alignment