Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   TK78_RS00485 Genome accession   NZ_CP010833
Coordinates   88913..89914 (+) Length   333 a.a.
NCBI ID   WP_075268182.1    Uniprot ID   -
Organism   Streptomyces sp. Tue 6075 strain Tue6075     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 83913..94914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TK78_RS00465 (TK78_00410) - 84450..85457 (+) 1008 WP_159027394.1 hypothetical protein -
  TK78_RS00470 (TK78_00415) - 85726..87015 (+) 1290 WP_075262801.1 ABC transporter substrate-binding protein -
  TK78_RS00475 (TK78_00420) - 87047..87982 (+) 936 WP_075262802.1 sugar ABC transporter permease -
  TK78_RS00480 (TK78_00425) - 87996..88823 (+) 828 WP_030717909.1 carbohydrate ABC transporter permease -
  TK78_RS00485 (TK78_00430) cytR 88913..89914 (+) 1002 WP_075268182.1 LacI family DNA-binding transcriptional regulator Regulator
  TK78_RS00490 (TK78_00435) - 90043..91977 (+) 1935 WP_075262803.1 cellulase family glycosylhydrolase -
  TK78_RS00495 (TK78_00440) - 92041..94524 (+) 2484 WP_107472761.1 glycoside hydrolase family 3 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 34618.55 Da        Isoelectric Point: 7.9701

>NTDB_id=124695 TK78_RS00485 WP_075268182.1 88913..89914(+) (cytR) [Streptomyces sp. Tue 6075 strain Tue6075]
MAAAAGVSTATVSQAVNGTGRISEATRRRVLAAAAELGWSPSASATALRRARTRTIALVVRRPTDVLGVDPHFSELITGL
EGELAPRGYGLLLHLVPGLAEESALYERLVAEGRIDGAVLTEARSDDPRPGLLRRLGLPAVLLGSPERGSPVPGVGLGQQ
GAGVREAVAHLLALGHRRIAYVAGPAELVHTGARRTAFEQALAEAGLRPAAVRHTDFTEEAAVTVTEELLGLPDRPTALV
FPNDSMAVCGMGAAQRAGLRVPADVSVVGYDNLPLGRWLHPRLSSVDQQVQRVGAAAALTLLARCGEDVPTASLEGRPRL
VVRESTGPAPAAP

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=124695 TK78_RS00485 WP_075268182.1 88913..89914(+) (cytR) [Streptomyces sp. Tue 6075 strain Tue6075]
GTGGCGGCCGCGGCGGGGGTCTCCACCGCCACGGTGTCCCAGGCGGTCAACGGAACGGGGCGGATCTCGGAGGCGACCCG
GCGCCGGGTCCTGGCGGCGGCGGCCGAGCTGGGCTGGTCGCCCAGTGCGTCGGCGACCGCCCTGCGCCGGGCGCGGACCC
GGACGATCGCCCTCGTCGTGCGCCGTCCGACGGACGTCCTCGGGGTCGACCCGCACTTCAGCGAGCTGATCACCGGTCTG
GAGGGTGAGCTGGCCCCCCGCGGTTACGGTCTGCTGCTGCATCTGGTCCCGGGGCTGGCCGAGGAGAGCGCGCTGTACGA
ACGGCTCGTCGCCGAGGGCAGGATCGACGGTGCGGTGCTCACCGAGGCCCGGTCGGACGACCCGCGCCCCGGCCTCCTCC
GGCGACTCGGCCTGCCCGCCGTGCTGCTGGGCTCGCCGGAACGCGGAAGCCCGGTGCCCGGGGTGGGCCTCGGGCAGCAG
GGCGCGGGCGTCCGTGAGGCCGTCGCCCACCTGCTGGCGCTGGGCCACCGGCGTATCGCGTACGTCGCGGGTCCGGCCGA
GCTGGTGCACACCGGTGCCCGGCGCACGGCGTTCGAACAGGCGCTGGCCGAGGCGGGGCTGCGGCCCGCCGCCGTCCGGC
ACACCGATTTCACCGAGGAGGCCGCCGTCACGGTGACCGAGGAGCTCCTCGGTCTGCCGGACCGGCCCACCGCCCTGGTC
TTCCCCAATGACTCCATGGCCGTCTGCGGGATGGGCGCCGCCCAGCGCGCCGGCCTGCGGGTACCCGCGGACGTGTCGGT
GGTGGGGTACGACAACCTCCCCCTGGGCCGCTGGCTGCACCCCCGCCTGAGCAGCGTGGACCAGCAGGTGCAGCGGGTCG
GCGCGGCCGCCGCGCTGACGCTGCTCGCCCGCTGCGGCGAGGACGTGCCCACCGCGTCCCTGGAGGGGCGGCCGCGCCTG
GTCGTCCGGGAGTCGACCGGCCCCGCGCCTGCCGCTCCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-326)

Bacterial regulatory proteins, lacI family (LacI)

(2-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.012

100

0.363