Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   TO73_RS10660 Genome accession   NZ_CP010822
Coordinates   2010977..2012008 (+) Length   343 a.a.
NCBI ID   WP_003046681.1    Uniprot ID   A0ABN4IM09
Organism   Thermus aquaticus Y51MC23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2005977..2017008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TO73_RS10640 (TO73_2209) pstC 2006885..2007787 (+) 903 WP_040684373.1 phosphate ABC transporter permease subunit PstC -
  TO73_RS10645 (TO73_2210) pstA 2007780..2008985 (+) 1206 WP_003046688.1 phosphate ABC transporter permease PstA -
  TO73_RS10650 (TO73_2211) pstB 2008979..2009794 (+) 816 WP_040684358.1 phosphate ABC transporter ATP-binding protein PstB -
  TO73_RS10655 (TO73_2212) - 2009805..2010977 (+) 1173 WP_003046683.1 MFS transporter -
  TO73_RS10660 (TO73_2213) recF 2010977..2012008 (+) 1032 WP_003046681.1 DNA replication/repair protein RecF Machinery gene
  TO73_RS10665 (TO73_2214) - 2011993..2012751 (+) 759 WP_003046678.1 DUF721 domain-containing protein -
  TO73_RS10670 (TO73_2215) - 2013100..2013294 (-) 195 WP_003046675.1 type II toxin-antitoxin system HicA family toxin -
  TO73_RS10675 (TO73_2216) - 2013294..2013515 (-) 222 WP_003046672.1 DUF1902 domain-containing protein -
  TO73_RS10680 (TO73_2217) - 2013555..2014319 (+) 765 WP_003046670.1 hypothetical protein -
  TO73_RS10685 (TO73_2218) - 2014393..2014608 (+) 216 WP_003046667.1 hypothetical protein -
  TO73_RS10690 (TO73_2219) - 2014618..2015514 (+) 897 WP_003046664.1 bifunctional DNA primase/polymerase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 38242.30 Da        Isoelectric Point: 7.9938

>NTDB_id=124688 TO73_RS10660 WP_003046681.1 2010977..2012008(+) (recF) [Thermus aquaticus Y51MC23]
MRLLAFRQRHFRNLAFSLFRPPPGLLALVGGNAQGKTGLLLAIHLALGGEVRGTLEDLIRFGEKEAWLQAEVETELGVFR
VEQRIGLEGREIRLNERPVGLRALYELPGSVLILPEDVEVVLGPKEERRGFLDHLLARFSRRYAALLSAYEKALRQRNAL
LKTGGNSLSVWDQELARYGEEITLLRRRFLKRFLPLFQSVHQTLAPGEVGLRLEETAPEGLLQALAARREEERLRGQTLV
GPHRDDLVFLLGGRPAHRFASRGEAKALALALRLAEHRLLSEHHGEPPLLLVDEWSEELDEARRAALLAYAKSLPQAILA
GLLAPEGVPVCWVQEGVVLCPGG

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=124688 TO73_RS10660 WP_003046681.1 2010977..2012008(+) (recF) [Thermus aquaticus Y51MC23]
ATGCGGCTTCTGGCCTTTCGGCAGCGGCATTTCCGTAACCTGGCCTTCTCCCTGTTCCGCCCCCCTCCTGGCCTTTTGGC
CCTGGTGGGGGGAAACGCCCAGGGGAAGACGGGGCTCCTCCTGGCCATCCACCTGGCCCTGGGGGGGGAGGTGCGGGGGA
CCCTCGAGGACCTGATCCGCTTTGGGGAGAAGGAGGCCTGGCTTCAGGCGGAGGTGGAGACGGAGCTCGGGGTCTTTCGG
GTGGAGCAGCGAATCGGCCTCGAGGGCCGGGAGATCCGCCTAAACGAAAGGCCCGTCGGCCTCAGGGCCCTTTACGAGCT
TCCGGGGTCGGTCCTCATCCTCCCCGAGGACGTGGAGGTGGTCCTGGGTCCCAAAGAGGAAAGGCGGGGGTTTTTGGACC
ACCTCCTGGCCCGCTTTTCCCGGCGCTACGCCGCCCTCCTTTCCGCCTACGAGAAGGCCCTCCGCCAGAGAAACGCCCTC
CTGAAGACGGGGGGCAACAGCCTCTCGGTCTGGGACCAGGAGCTCGCCCGCTACGGCGAGGAGATCACGCTTCTGCGGCG
CCGCTTCCTGAAGCGCTTCCTGCCCCTCTTCCAGAGCGTCCACCAGACCCTGGCCCCGGGAGAGGTGGGCCTTAGGCTGG
AGGAGACCGCCCCTGAGGGCCTCCTGCAGGCCCTGGCGGCCAGGCGGGAGGAGGAGCGCCTCCGGGGCCAGACCCTGGTG
GGGCCCCACCGGGACGACCTGGTCTTCCTCCTTGGGGGCCGCCCCGCCCACCGCTTCGCCAGCCGGGGGGAGGCCAAGGC
CCTGGCCCTGGCCCTGCGCCTGGCGGAGCACCGCCTCCTCAGCGAGCACCACGGGGAGCCTCCCCTCCTTCTGGTGGACG
AGTGGAGCGAGGAGCTGGACGAGGCCCGCCGCGCCGCCCTCCTGGCCTACGCCAAAAGCCTTCCCCAGGCCATTCTGGCC
GGGCTTCTGGCCCCGGAGGGGGTGCCGGTATGCTGGGTGCAGGAGGGGGTGGTCCTGTGCCCTGGCGGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.954

100

0.426