Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   TO73_RS08720 Genome accession   NZ_CP010822
Coordinates   1650893..1651351 (-) Length   152 a.a.
NCBI ID   WP_003045110.1    Uniprot ID   A0ABM5VNR9
Organism   Thermus aquaticus Y51MC23     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1645893..1656351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TO73_RS13025 (TO73_1799) - 1646648..1646812 (-) 165 WP_003045090.1 hypothetical protein -
  TO73_RS08690 (TO73_1800) - 1646821..1647009 (-) 189 WP_003045091.1 hypothetical protein -
  TO73_RS08695 (TO73_1801) ddl 1647031..1647990 (-) 960 WP_040684229.1 D-alanine--D-alanine ligase -
  TO73_RS08700 (TO73_1802) pth 1648006..1648560 (-) 555 WP_003045098.1 aminoacyl-tRNA hydrolase -
  TO73_RS08705 (TO73_1803) - 1648622..1649239 (-) 618 WP_003045100.1 50S ribosomal protein L25 -
  TO73_RS08710 (TO73_1804) - 1649292..1650215 (-) 924 WP_003045104.1 ribose-phosphate pyrophosphokinase -
  TO73_RS08715 (TO73_2411) mtnN 1650219..1650896 (-) 678 WP_003045106.1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase -
  TO73_RS08720 (TO73_1805) luxS 1650893..1651351 (-) 459 WP_003045110.1 S-ribosylhomocysteine lyase Regulator
  TO73_RS08725 (TO73_1806) guaA 1651382..1652893 (+) 1512 WP_003045113.1 glutamine-hydrolyzing GMP synthase -
  TO73_RS08730 (TO73_1807) - 1652893..1653462 (+) 570 WP_003045116.1 Uma2 family endonuclease -
  TO73_RS08735 (TO73_1808) - 1653488..1653775 (+) 288 WP_003045118.1 glutamine synthetase/cystathionine beta-lyase binding protein -
  TO73_RS08740 (TO73_1809) - 1653775..1654152 (+) 378 WP_003045120.1 VOC family protein -
  TO73_RS08745 (TO73_1810) - 1654140..1655636 (+) 1497 WP_003045123.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16804.34 Da        Isoelectric Point: 6.4901

>NTDB_id=124678 TO73_RS08720 WP_003045110.1 1650893..1651351(-) (luxS) [Thermus aquaticus Y51MC23]
MAEVESFGLDHTKVQAPYVRLAGRKRVASGVVEKYDLRLAQPNREALPTAALHTLEHLLAGYIRDHLPGVIDLSPMGCRT
GFYLVAEGPLEEEEVLLAFERALRDVLLHQGPIPGASFRECGNYRDHDLEGAKAWAEKVLRAGLKVQPTIPL

Nucleotide


Download         Length: 459 bp        

>NTDB_id=124678 TO73_RS08720 WP_003045110.1 1650893..1651351(-) (luxS) [Thermus aquaticus Y51MC23]
ATGGCCGAGGTGGAGAGCTTTGGGCTAGACCACACCAAGGTGCAGGCCCCCTACGTGCGCCTGGCGGGCAGGAAGAGGGT
GGCAAGCGGGGTGGTGGAGAAGTACGACCTGAGACTGGCCCAGCCCAACCGGGAGGCCCTTCCCACGGCGGCCTTGCACA
CCCTGGAGCACCTTCTCGCGGGGTATATACGGGACCACCTCCCCGGGGTCATTGACCTCTCCCCCATGGGCTGCCGCACG
GGCTTCTACCTGGTGGCCGAGGGGCCCCTGGAGGAAGAGGAGGTCCTCTTAGCCTTTGAGCGGGCCTTGAGGGATGTCCT
CCTGCACCAAGGGCCCATCCCCGGGGCTAGCTTTAGGGAGTGCGGCAACTACCGGGACCACGACCTGGAAGGGGCCAAGG
CCTGGGCGGAGAAGGTCCTCCGGGCGGGCCTCAAGGTCCAGCCCACCATACCCCTATGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(3-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.857

100

0.434

Multiple sequence alignment